Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0632 and Rru_A0633 are separated by 12 nucleotides Rru_A0633 and Rru_A0634 are separated by 11 nucleotides Rru_A0634 and Rru_A0635 are separated by 165 nucleotides
Rru_A0632: Rru_A0632 - chemotaxis sensory transducer (NCBI), at 751,291 to 753,501
_A0632
Rru_A0633: Rru_A0633 - Exonuclease (NCBI), at 753,514 to 754,143
_A0633
Rru_A0634: Rru_A0634 - Cyclic nucleotide-binding domain (cNMP-BD) protein (NCBI), at 754,155 to 755,969
_A0634
Rru_A0635: Rru_A0635 - Na+/solute symporter (NCBI), at 756,135 to 757,814
_A0635
Position (kb) 754
755
756 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 753.156 kb on + strand, within Rru_A0632 at 753.156 kb on + strand, within Rru_A0632 at 753.166 kb on + strand, within Rru_A0632 at 753.166 kb on + strand, within Rru_A0632 at 753.166 kb on + strand, within Rru_A0632 at 753.433 kb on + strand at 753.433 kb on + strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.434 kb on - strand at 753.554 kb on + strand at 753.554 kb on + strand at 753.554 kb on + strand at 753.555 kb on - strand at 753.555 kb on - strand at 753.661 kb on - strand, within Rru_A0633 at 753.661 kb on - strand, within Rru_A0633 at 753.663 kb on - strand, within Rru_A0633 at 753.663 kb on - strand, within Rru_A0633 at 753.663 kb on - strand, within Rru_A0633 at 753.791 kb on + strand, within Rru_A0633 at 753.792 kb on - strand, within Rru_A0633 at 753.794 kb on + strand, within Rru_A0633 at 753.795 kb on - strand, within Rru_A0633 at 753.795 kb on - strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.051 kb on + strand, within Rru_A0633 at 754.088 kb on + strand at 754.088 kb on + strand at 754.088 kb on + strand at 754.089 kb on - strand at 754.089 kb on - strand at 754.089 kb on - strand at 754.156 kb on + strand at 754.235 kb on + strand at 754.741 kb on + strand, within Rru_A0634 at 754.741 kb on + strand, within Rru_A0634 at 754.742 kb on - strand, within Rru_A0634 at 754.742 kb on - strand, within Rru_A0634 at 754.742 kb on - strand, within Rru_A0634 at 754.742 kb on - strand, within Rru_A0634 at 755.186 kb on + strand, within Rru_A0634 at 755.186 kb on + strand, within Rru_A0634 at 755.186 kb on + strand, within Rru_A0634 at 755.186 kb on + strand, within Rru_A0634 at 755.186 kb on + strand, within Rru_A0634 at 755.186 kb on + strand, within Rru_A0634 at 755.186 kb on + strand, within Rru_A0634 at 755.186 kb on + strand, within Rru_A0634 at 755.186 kb on + strand, within Rru_A0634 at 755.186 kb on + strand, within Rru_A0634 at 755.187 kb on - strand, within Rru_A0634 at 755.187 kb on - strand, within Rru_A0634 at 755.187 kb on - strand, within Rru_A0634 at 755.187 kb on - strand, within Rru_A0634 at 755.187 kb on - strand, within Rru_A0634 at 755.187 kb on - strand, within Rru_A0634 at 755.187 kb on - strand, within Rru_A0634 at 755.187 kb on - strand, within Rru_A0634 at 755.188 kb on + strand, within Rru_A0634 at 755.188 kb on + strand, within Rru_A0634 at 755.188 kb on + strand, within Rru_A0634 at 755.189 kb on - strand, within Rru_A0634 at 755.189 kb on - strand, within Rru_A0634 at 755.881 kb on + strand at 755.881 kb on + strand at 755.881 kb on + strand at 755.882 kb on - strand at 755.882 kb on - strand at 756.060 kb on - strand at 756.060 kb on - strand at 756.060 kb on - strand at 756.184 kb on + strand at 756.184 kb on + strand at 756.185 kb on - strand at 756.185 kb on - strand at 756.185 kb on - strand at 756.299 kb on - strand at 756.625 kb on + strand, within Rru_A0635 at 756.865 kb on + strand, within Rru_A0635 at 756.865 kb on + strand, within Rru_A0635 at 756.866 kb on - strand, within Rru_A0635 at 756.866 kb on - strand, within Rru_A0635 at 756.866 kb on - strand, within Rru_A0635 at 756.866 kb on - strand, within Rru_A0635 at 756.871 kb on + strand, within Rru_A0635 at 756.871 kb on + strand, within Rru_A0635 at 756.872 kb on - strand, within Rru_A0635 at 756.892 kb on + strand, within Rru_A0635 at 756.893 kb on - strand, within Rru_A0635 at 756.905 kb on + strand, within Rru_A0635 at 756.906 kb on - strand, within Rru_A0635
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 753,156 + Rru_A0632 0.84 -0.7 753,156 + Rru_A0632 0.84 +0.6 753,166 + Rru_A0632 0.85 -0.9 753,166 + Rru_A0632 0.85 -0.9 753,166 + Rru_A0632 0.85 -0.7 753,433 + +1.1 753,433 + -0.2 753,434 - -0.4 753,434 - +0.3 753,434 - -0.7 753,434 - -0.1 753,434 - -0.4 753,434 - +0.1 753,434 - -1.3 753,434 - +0.8 753,434 - +0.6 753,554 + -0.9 753,554 + +0.6 753,554 + +0.4 753,555 - -0.3 753,555 - +1.1 753,661 - Rru_A0633 0.23 -1.0 753,661 - Rru_A0633 0.23 +0.2 753,663 - Rru_A0633 0.24 -0.2 753,663 - Rru_A0633 0.24 -2.0 753,663 - Rru_A0633 0.24 +0.7 753,791 + Rru_A0633 0.44 -0.1 753,792 - Rru_A0633 0.44 +2.7 753,794 + Rru_A0633 0.44 +0.9 753,795 - Rru_A0633 0.45 -0.6 753,795 - Rru_A0633 0.45 -0.2 754,051 + Rru_A0633 0.85 -1.3 754,051 + Rru_A0633 0.85 -2.6 754,051 + Rru_A0633 0.85 -0.9 754,051 + Rru_A0633 0.85 -0.5 754,088 + +1.1 754,088 + +0.5 754,088 + +3.2 754,089 - -0.2 754,089 - -3.8 754,089 - +0.8 754,156 + +0.3 754,235 + +0.3 754,741 + Rru_A0634 0.32 +0.1 754,741 + Rru_A0634 0.32 -0.8 754,742 - Rru_A0634 0.32 +0.2 754,742 - Rru_A0634 0.32 +0.2 754,742 - Rru_A0634 0.32 -1.4 754,742 - Rru_A0634 0.32 -0.3 755,186 + Rru_A0634 0.57 -0.3 755,186 + Rru_A0634 0.57 -0.4 755,186 + Rru_A0634 0.57 -0.2 755,186 + Rru_A0634 0.57 -1.0 755,186 + Rru_A0634 0.57 +0.0 755,186 + Rru_A0634 0.57 +0.3 755,186 + Rru_A0634 0.57 -1.3 755,186 + Rru_A0634 0.57 -0.4 755,186 + Rru_A0634 0.57 -2.3 755,186 + Rru_A0634 0.57 +0.3 755,187 - Rru_A0634 0.57 -0.9 755,187 - Rru_A0634 0.57 -0.2 755,187 - Rru_A0634 0.57 -0.4 755,187 - Rru_A0634 0.57 -2.2 755,187 - Rru_A0634 0.57 -0.2 755,187 - Rru_A0634 0.57 -1.0 755,187 - Rru_A0634 0.57 +0.1 755,187 - Rru_A0634 0.57 -0.2 755,188 + Rru_A0634 0.57 +0.3 755,188 + Rru_A0634 0.57 -0.5 755,188 + Rru_A0634 0.57 -1.8 755,189 - Rru_A0634 0.57 -3.0 755,189 - Rru_A0634 0.57 -0.4 755,881 + -0.9 755,881 + -0.2 755,881 + -1.9 755,882 - -3.1 755,882 - -2.7 756,060 - -1.6 756,060 - -0.3 756,060 - -0.6 756,184 + -0.0 756,184 + -0.2 756,185 - -0.4 756,185 - -0.9 756,185 - -2.2 756,299 - +0.3 756,625 + Rru_A0635 0.29 -2.3 756,865 + Rru_A0635 0.43 -1.1 756,865 + Rru_A0635 0.43 -0.2 756,866 - Rru_A0635 0.44 -1.1 756,866 - Rru_A0635 0.44 +1.1 756,866 - Rru_A0635 0.44 -2.4 756,866 - Rru_A0635 0.44 +0.2 756,871 + Rru_A0635 0.44 -1.0 756,871 + Rru_A0635 0.44 -0.0 756,872 - Rru_A0635 0.44 +0.2 756,892 + Rru_A0635 0.45 -0.0 756,893 - Rru_A0635 0.45 +0.1 756,905 + Rru_A0635 0.46 -1.4 756,906 - Rru_A0635 0.46 +0.8
Or see this region's nucleotide sequence