Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0555

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0554 and Rru_A0555 are separated by 14 nucleotidesRru_A0555 and Rru_A0556 are separated by 219 nucleotides Rru_A0554: Rru_A0554 - Rh-like protein/ammonium transporter (NCBI), at 655,212 to 656,531 _A0554 Rru_A0555: Rru_A0555 - Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI), at 656,546 to 656,884 _A0555 Rru_A0556: Rru_A0556 - Formyltetrahydrofolate deformylase (NCBI), at 657,104 to 657,997 _A0556 Position (kb) 656 657Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 655.687 kb on + strand, within Rru_A0554at 655.687 kb on + strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.688 kb on - strand, within Rru_A0554at 655.805 kb on + strand, within Rru_A0554at 655.806 kb on - strand, within Rru_A0554at 655.806 kb on - strand, within Rru_A0554at 656.604 kb on + strand, within Rru_A0555at 656.733 kb on + strand, within Rru_A0555at 656.734 kb on - strand, within Rru_A0555at 656.734 kb on - strand, within Rru_A0555at 656.749 kb on - strand, within Rru_A0555at 657.229 kb on - strand, within Rru_A0556at 657.294 kb on + strand, within Rru_A0556at 657.294 kb on + strand, within Rru_A0556at 657.294 kb on + strand, within Rru_A0556at 657.295 kb on - strand, within Rru_A0556at 657.295 kb on - strand, within Rru_A0556at 657.346 kb on - strand, within Rru_A0556at 657.388 kb on + strand, within Rru_A0556at 657.388 kb on + strand, within Rru_A0556at 657.444 kb on + strand, within Rru_A0556at 657.444 kb on + strand, within Rru_A0556at 657.654 kb on + strand, within Rru_A0556at 657.654 kb on + strand, within Rru_A0556at 657.654 kb on + strand, within Rru_A0556at 657.654 kb on + strand, within Rru_A0556at 657.655 kb on - strand, within Rru_A0556at 657.849 kb on + strand, within Rru_A0556at 657.849 kb on + strand, within Rru_A0556at 657.849 kb on + strand, within Rru_A0556at 657.849 kb on + strand, within Rru_A0556at 657.850 kb on - strand, within Rru_A0556at 657.850 kb on - strand, within Rru_A0556at 657.852 kb on + strand, within Rru_A0556at 657.853 kb on - strand, within Rru_A0556at 657.853 kb on - strand, within Rru_A0556

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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655,687 + Rru_A0554 0.36 +0.9
655,687 + Rru_A0554 0.36 -2.8
655,688 - Rru_A0554 0.36 +1.3
655,688 - Rru_A0554 0.36 -1.8
655,688 - Rru_A0554 0.36 +0.3
655,688 - Rru_A0554 0.36 -2.8
655,805 + Rru_A0554 0.45 -2.6
655,806 - Rru_A0554 0.45 -1.9
655,806 - Rru_A0554 0.45 -1.6
656,604 + Rru_A0555 0.17 -1.2
656,733 + Rru_A0555 0.55 -0.3
656,734 - Rru_A0555 0.55 -1.1
656,734 - Rru_A0555 0.55 -0.3
656,749 - Rru_A0555 0.60 -2.7
657,229 - Rru_A0556 0.14 +0.6
657,294 + Rru_A0556 0.21 -0.1
657,294 + Rru_A0556 0.21 -0.3
657,294 + Rru_A0556 0.21 +0.3
657,295 - Rru_A0556 0.21 +0.5
657,295 - Rru_A0556 0.21 +0.6
657,346 - Rru_A0556 0.27 +0.6
657,388 + Rru_A0556 0.32 +2.6
657,388 + Rru_A0556 0.32 +0.5
657,444 + Rru_A0556 0.38 -3.3
657,444 + Rru_A0556 0.38 +0.6
657,654 + Rru_A0556 0.62 -1.5
657,654 + Rru_A0556 0.62 -0.5
657,654 + Rru_A0556 0.62 +0.6
657,654 + Rru_A0556 0.62 -0.2
657,655 - Rru_A0556 0.62 +1.3
657,849 + Rru_A0556 0.83 -2.0
657,849 + Rru_A0556 0.83 -0.9
657,849 + Rru_A0556 0.83 +0.0
657,849 + Rru_A0556 0.83 -0.6
657,850 - Rru_A0556 0.83 +0.5
657,850 - Rru_A0556 0.83 -0.3
657,852 + Rru_A0556 0.84 +0.3
657,853 - Rru_A0556 0.84 +0.2
657,853 - Rru_A0556 0.84 -0.2

Or see this region's nucleotide sequence