Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0052 and Rru_A0053 are separated by 53 nucleotides Rru_A0053 and Rru_A0054 are separated by 637 nucleotides
Rru_A0052: Rru_A0052 - Biotin carboxylase (NCBI), at 53,905 to 55,893
_A0052
Rru_A0053: Rru_A0053 - Carboxyl transferase (NCBI), at 55,947 to 57,479
_A0053
Rru_A0054: Rru_A0054 - Deoxyxylulose-5-phosphate synthase (NCBI), at 58,117 to 60,054
_A0054
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 55.094 kb on + strand, within Rru_A0052 at 55.094 kb on + strand, within Rru_A0052 at 55.094 kb on + strand, within Rru_A0052 at 55.095 kb on - strand, within Rru_A0052 at 55.095 kb on - strand, within Rru_A0052 at 55.229 kb on + strand, within Rru_A0052 at 55.229 kb on + strand, within Rru_A0052 at 55.229 kb on + strand, within Rru_A0052 at 55.229 kb on + strand, within Rru_A0052 at 55.230 kb on - strand, within Rru_A0052 at 55.230 kb on - strand, within Rru_A0052 at 55.230 kb on - strand, within Rru_A0052 at 55.230 kb on - strand, within Rru_A0052 at 55.235 kb on + strand, within Rru_A0052 at 55.235 kb on + strand, within Rru_A0052 at 55.235 kb on + strand, within Rru_A0052 at 55.235 kb on + strand, within Rru_A0052 at 55.235 kb on + strand, within Rru_A0052 at 55.236 kb on - strand, within Rru_A0052 at 55.236 kb on - strand, within Rru_A0052 at 55.236 kb on - strand, within Rru_A0052 at 55.491 kb on + strand, within Rru_A0052 at 55.492 kb on - strand, within Rru_A0052 at 55.493 kb on + strand, within Rru_A0052 at 55.493 kb on + strand, within Rru_A0052 at 55.493 kb on + strand, within Rru_A0052 at 55.494 kb on - strand, within Rru_A0052 at 55.494 kb on - strand, within Rru_A0052 at 55.494 kb on - strand, within Rru_A0052 at 55.494 kb on - strand, within Rru_A0052 at 55.494 kb on - strand, within Rru_A0052 at 55.494 kb on - strand, within Rru_A0052 at 55.649 kb on + strand, within Rru_A0052 at 55.715 kb on + strand at 55.716 kb on - strand at 55.884 kb on + strand at 56.221 kb on + strand, within Rru_A0053 at 56.221 kb on + strand, within Rru_A0053 at 56.221 kb on + strand, within Rru_A0053 at 56.221 kb on + strand, within Rru_A0053 at 56.222 kb on - strand, within Rru_A0053 at 56.222 kb on - strand, within Rru_A0053 at 56.222 kb on - strand, within Rru_A0053 at 56.275 kb on + strand, within Rru_A0053 at 56.276 kb on - strand, within Rru_A0053 at 56.329 kb on + strand, within Rru_A0053 at 56.561 kb on + strand, within Rru_A0053 at 56.561 kb on + strand, within Rru_A0053 at 56.562 kb on - strand, within Rru_A0053 at 56.573 kb on - strand, within Rru_A0053 at 56.638 kb on + strand, within Rru_A0053 at 56.638 kb on + strand, within Rru_A0053 at 56.638 kb on + strand, within Rru_A0053 at 56.639 kb on - strand, within Rru_A0053 at 56.687 kb on - strand, within Rru_A0053 at 56.829 kb on - strand, within Rru_A0053 at 56.912 kb on + strand, within Rru_A0053 at 56.912 kb on + strand, within Rru_A0053 at 56.913 kb on - strand, within Rru_A0053 at 56.913 kb on - strand, within Rru_A0053 at 56.913 kb on - strand, within Rru_A0053 at 56.913 kb on - strand, within Rru_A0053 at 56.913 kb on - strand, within Rru_A0053 at 56.913 kb on - strand, within Rru_A0053 at 56.913 kb on - strand, within Rru_A0053 at 56.913 kb on - strand, within Rru_A0053 at 56.914 kb on + strand, within Rru_A0053 at 56.914 kb on + strand, within Rru_A0053 at 56.914 kb on + strand, within Rru_A0053 at 56.915 kb on - strand, within Rru_A0053 at 56.915 kb on - strand, within Rru_A0053 at 56.915 kb on - strand, within Rru_A0053 at 56.962 kb on + strand, within Rru_A0053 at 56.962 kb on + strand, within Rru_A0053 at 56.962 kb on + strand, within Rru_A0053 at 56.963 kb on - strand, within Rru_A0053 at 57.053 kb on - strand, within Rru_A0053 at 57.395 kb on + strand at 57.395 kb on + strand at 57.395 kb on + strand at 57.395 kb on + strand at 57.396 kb on - strand at 57.396 kb on - strand at 57.396 kb on - strand at 57.479 kb on + strand at 57.479 kb on + strand at 57.480 kb on - strand at 57.494 kb on - strand at 57.494 kb on - strand at 57.821 kb on + strand at 57.821 kb on + strand at 57.821 kb on + strand at 57.822 kb on - strand at 57.823 kb on + strand at 57.823 kb on + strand at 57.823 kb on + strand at 57.824 kb on - strand at 57.824 kb on - strand at 57.827 kb on + strand at 57.896 kb on - strand at 57.896 kb on - strand at 57.896 kb on - strand at 57.896 kb on - strand at 57.896 kb on - strand at 57.939 kb on - strand at 58.003 kb on + strand at 58.008 kb on + strand at 58.009 kb on - strand at 58.009 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 55,094 + Rru_A0052 0.60 +1.6 55,094 + Rru_A0052 0.60 -0.4 55,094 + Rru_A0052 0.60 -1.8 55,095 - Rru_A0052 0.60 -2.0 55,095 - Rru_A0052 0.60 -2.1 55,229 + Rru_A0052 0.67 -1.6 55,229 + Rru_A0052 0.67 -1.8 55,229 + Rru_A0052 0.67 -3.4 55,229 + Rru_A0052 0.67 -4.0 55,230 - Rru_A0052 0.67 -2.6 55,230 - Rru_A0052 0.67 -2.4 55,230 - Rru_A0052 0.67 -1.3 55,230 - Rru_A0052 0.67 -2.8 55,235 + Rru_A0052 0.67 -0.8 55,235 + Rru_A0052 0.67 -1.7 55,235 + Rru_A0052 0.67 -1.1 55,235 + Rru_A0052 0.67 -0.5 55,235 + Rru_A0052 0.67 -2.0 55,236 - Rru_A0052 0.67 -2.9 55,236 - Rru_A0052 0.67 -1.0 55,236 - Rru_A0052 0.67 +0.4 55,491 + Rru_A0052 0.80 -3.1 55,492 - Rru_A0052 0.80 -0.6 55,493 + Rru_A0052 0.80 -0.0 55,493 + Rru_A0052 0.80 -1.6 55,493 + Rru_A0052 0.80 -2.6 55,494 - Rru_A0052 0.80 -1.2 55,494 - Rru_A0052 0.80 -1.7 55,494 - Rru_A0052 0.80 -2.6 55,494 - Rru_A0052 0.80 -5.5 55,494 - Rru_A0052 0.80 -2.6 55,494 - Rru_A0052 0.80 -1.4 55,649 + Rru_A0052 0.88 -1.9 55,715 + -0.9 55,716 - -2.0 55,884 + -2.5 56,221 + Rru_A0053 0.18 -0.4 56,221 + Rru_A0053 0.18 -0.6 56,221 + Rru_A0053 0.18 -3.6 56,221 + Rru_A0053 0.18 -1.7 56,222 - Rru_A0053 0.18 -5.9 56,222 - Rru_A0053 0.18 -2.8 56,222 - Rru_A0053 0.18 -1.9 56,275 + Rru_A0053 0.21 -1.1 56,276 - Rru_A0053 0.21 -3.4 56,329 + Rru_A0053 0.25 -3.0 56,561 + Rru_A0053 0.40 +0.5 56,561 + Rru_A0053 0.40 -4.5 56,562 - Rru_A0053 0.40 -1.6 56,573 - Rru_A0053 0.41 +0.9 56,638 + Rru_A0053 0.45 -2.9 56,638 + Rru_A0053 0.45 -2.0 56,638 + Rru_A0053 0.45 -2.2 56,639 - Rru_A0053 0.45 -2.6 56,687 - Rru_A0053 0.48 -2.0 56,829 - Rru_A0053 0.58 -2.0 56,912 + Rru_A0053 0.63 -1.0 56,912 + Rru_A0053 0.63 -0.5 56,913 - Rru_A0053 0.63 -0.8 56,913 - Rru_A0053 0.63 -1.9 56,913 - Rru_A0053 0.63 -2.6 56,913 - Rru_A0053 0.63 -2.4 56,913 - Rru_A0053 0.63 -1.6 56,913 - Rru_A0053 0.63 +0.4 56,913 - Rru_A0053 0.63 -0.6 56,913 - Rru_A0053 0.63 -2.6 56,914 + Rru_A0053 0.63 -2.3 56,914 + Rru_A0053 0.63 -3.4 56,914 + Rru_A0053 0.63 -0.7 56,915 - Rru_A0053 0.63 +0.1 56,915 - Rru_A0053 0.63 -3.8 56,915 - Rru_A0053 0.63 -2.2 56,962 + Rru_A0053 0.66 -3.8 56,962 + Rru_A0053 0.66 -1.1 56,962 + Rru_A0053 0.66 -2.1 56,963 - Rru_A0053 0.66 -1.3 57,053 - Rru_A0053 0.72 -1.5 57,395 + -1.4 57,395 + -2.6 57,395 + -3.9 57,395 + -0.9 57,396 - -0.9 57,396 - +0.1 57,396 - -4.2 57,479 + -2.2 57,479 + -0.5 57,480 - -3.0 57,494 - -2.3 57,494 - -1.3 57,821 + -2.1 57,821 + -2.1 57,821 + -2.7 57,822 - -0.6 57,823 + -1.4 57,823 + -1.7 57,823 + -3.0 57,824 - -0.3 57,824 - +0.8 57,827 + +0.3 57,896 - -1.2 57,896 - -0.1 57,896 - -1.1 57,896 - +2.1 57,896 - -2.0 57,939 - -0.1 58,003 + -1.2 58,008 + -0.6 58,009 - +0.6 58,009 - +0.1
Or see this region's nucleotide sequence