Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0043 and Rru_A0044 are separated by 36 nucleotides Rru_A0044 and Rru_A0045 are separated by 146 nucleotides Rru_A0045 and Rru_A0046 are separated by 13 nucleotides Rru_A0046 and Rru_A0047 are separated by 86 nucleotides
Rru_A0043: Rru_A0043 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxD (NCBI), at 45,342 to 46,511
_A0043
Rru_A0044: Rru_A0044 - acyl carrier protein (NCBI), at 46,548 to 46,799
_A0044
Rru_A0045: Rru_A0045 - Beta-ketoacyl synthase (NCBI), at 46,946 to 48,160
_A0045
Rru_A0046: Rru_A0046 - Protein of unknown function DUF523 (NCBI), at 48,174 to 48,683
_A0046
Rru_A0047: Rru_A0047 - ABC transporter component (NCBI), at 48,770 to 50,377
_A0047
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 46.914 kb on + strand at 46.914 kb on + strand at 48.241 kb on - strand, within Rru_A0046 at 48.242 kb on + strand, within Rru_A0046 at 48.243 kb on - strand, within Rru_A0046 at 48.447 kb on + strand, within Rru_A0046 at 48.447 kb on + strand, within Rru_A0046 at 48.447 kb on + strand, within Rru_A0046 at 48.448 kb on - strand, within Rru_A0046 at 48.448 kb on - strand, within Rru_A0046 at 48.549 kb on + strand, within Rru_A0046 at 48.549 kb on + strand, within Rru_A0046 at 48.549 kb on + strand, within Rru_A0046 at 48.550 kb on - strand, within Rru_A0046 at 48.550 kb on - strand, within Rru_A0046 at 48.681 kb on + strand at 48.747 kb on + strand at 48.748 kb on - strand at 48.880 kb on - strand at 48.949 kb on + strand, within Rru_A0047 at 48.949 kb on + strand, within Rru_A0047 at 48.949 kb on + strand, within Rru_A0047 at 48.950 kb on - strand, within Rru_A0047 at 48.950 kb on - strand, within Rru_A0047 at 48.950 kb on - strand, within Rru_A0047 at 48.950 kb on - strand, within Rru_A0047 at 48.950 kb on - strand, within Rru_A0047 at 49.123 kb on + strand, within Rru_A0047 at 49.124 kb on - strand, within Rru_A0047
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 46,914 + -0.4 46,914 + -0.6 48,241 - Rru_A0046 0.13 +0.9 48,242 + Rru_A0046 0.13 +0.3 48,243 - Rru_A0046 0.14 -0.3 48,447 + Rru_A0046 0.54 +0.2 48,447 + Rru_A0046 0.54 +1.4 48,447 + Rru_A0046 0.54 +0.2 48,448 - Rru_A0046 0.54 +1.8 48,448 - Rru_A0046 0.54 +0.4 48,549 + Rru_A0046 0.74 +0.7 48,549 + Rru_A0046 0.74 -2.6 48,549 + Rru_A0046 0.74 -1.0 48,550 - Rru_A0046 0.74 +1.4 48,550 - Rru_A0046 0.74 +1.3 48,681 + -0.4 48,747 + -0.6 48,748 - -0.0 48,880 - +1.3 48,949 + Rru_A0047 0.11 +0.5 48,949 + Rru_A0047 0.11 +1.2 48,949 + Rru_A0047 0.11 -1.3 48,950 - Rru_A0047 0.11 +0.9 48,950 - Rru_A0047 0.11 -2.2 48,950 - Rru_A0047 0.11 +0.7 48,950 - Rru_A0047 0.11 +0.1 48,950 - Rru_A0047 0.11 -0.0 49,123 + Rru_A0047 0.22 -3.6 49,124 - Rru_A0047 0.22 +0.9
Or see this region's nucleotide sequence