Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0041

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0040 and Rru_B0041 are separated by 147 nucleotidesRru_B0041 and Rru_B0042 are separated by 34 nucleotidesRru_B0042 and Rru_B0043 are separated by 103 nucleotides Rru_B0040: Rru_B0040 - Type I secretion membrane fusion protein, HlyD (NCBI), at 40,773 to 42,251 _B0040 Rru_B0041: Rru_B0041 - Transcriptional Regulator, XRE family (NCBI), at 42,399 to 42,710 _B0041 Rru_B0042: Rru_B0042 - hypothetical protein (NCBI), at 42,745 to 43,599 _B0042 Rru_B0043: Rru_B0043 - hypothetical protein (NCBI), at 43,703 to 44,356 _B0043 Position (kb) 42 43Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.399 kb on + strand, within Rru_B0040at 41.400 kb on - strand, within Rru_B0040at 41.400 kb on - strand, within Rru_B0040at 41.400 kb on - strand, within Rru_B0040at 41.556 kb on + strand, within Rru_B0040at 41.556 kb on + strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.557 kb on - strand, within Rru_B0040at 41.558 kb on + strand, within Rru_B0040at 41.559 kb on - strand, within Rru_B0040at 41.627 kb on + strand, within Rru_B0040at 41.627 kb on + strand, within Rru_B0040at 41.627 kb on + strand, within Rru_B0040at 41.627 kb on + strand, within Rru_B0040at 41.627 kb on + strand, within Rru_B0040at 41.628 kb on - strand, within Rru_B0040at 41.628 kb on - strand, within Rru_B0040at 41.846 kb on + strand, within Rru_B0040at 41.846 kb on + strand, within Rru_B0040at 41.846 kb on + strand, within Rru_B0040at 42.069 kb on - strand, within Rru_B0040at 42.078 kb on + strand, within Rru_B0040at 42.078 kb on + strand, within Rru_B0040at 42.078 kb on + strand, within Rru_B0040at 42.078 kb on + strand, within Rru_B0040at 42.078 kb on + strand, within Rru_B0040at 42.079 kb on - strand, within Rru_B0040at 42.079 kb on - strand, within Rru_B0040at 42.079 kb on - strand, within Rru_B0040at 42.079 kb on - strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.081 kb on + strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.082 kb on - strand, within Rru_B0040at 42.199 kb on - strandat 42.199 kb on - strandat 42.199 kb on - strandat 42.249 kb on + strandat 42.249 kb on + strandat 42.250 kb on - strandat 42.250 kb on - strandat 42.250 kb on - strandat 42.250 kb on - strandat 42.309 kb on + strandat 42.310 kb on - strandat 42.318 kb on + strandat 42.318 kb on + strandat 42.318 kb on + strandat 42.318 kb on + strandat 42.319 kb on - strandat 42.319 kb on - strandat 42.319 kb on - strandat 42.321 kb on + strandat 42.321 kb on + strandat 42.321 kb on + strandat 42.322 kb on - strandat 42.322 kb on - strandat 42.326 kb on + strandat 42.326 kb on + strandat 42.327 kb on - strandat 42.327 kb on - strandat 42.369 kb on + strandat 42.402 kb on + strandat 42.402 kb on + strandat 42.403 kb on - strandat 42.403 kb on - strandat 42.534 kb on + strand, within Rru_B0041at 42.537 kb on + strand, within Rru_B0041at 42.657 kb on + strand, within Rru_B0041at 42.657 kb on + strand, within Rru_B0041at 42.657 kb on + strand, within Rru_B0041at 42.658 kb on - strand, within Rru_B0041at 42.672 kb on + strand, within Rru_B0041at 42.672 kb on + strand, within Rru_B0041at 42.673 kb on - strand, within Rru_B0041at 42.673 kb on - strand, within Rru_B0041at 42.673 kb on - strand, within Rru_B0041at 42.673 kb on - strand, within Rru_B0041at 42.708 kb on + strandat 42.709 kb on - strandat 42.709 kb on - strandat 42.727 kb on + strandat 42.727 kb on + strandat 42.727 kb on + strandat 42.727 kb on + strandat 42.727 kb on + strandat 42.727 kb on + strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.728 kb on - strandat 42.838 kb on + strand, within Rru_B0042at 42.839 kb on - strand, within Rru_B0042at 42.839 kb on - strand, within Rru_B0042at 42.839 kb on - strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.928 kb on + strand, within Rru_B0042at 42.929 kb on - strand, within Rru_B0042at 42.929 kb on - strand, within Rru_B0042at 42.929 kb on - strand, within Rru_B0042at 42.929 kb on - strand, within Rru_B0042at 43.409 kb on + strand, within Rru_B0042at 43.409 kb on + strand, within Rru_B0042at 43.409 kb on + strand, within Rru_B0042at 43.410 kb on - strand, within Rru_B0042at 43.541 kb on + strandat 43.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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41,399 + Rru_B0040 0.42 -0.2
41,399 + Rru_B0040 0.42 +0.6
41,399 + Rru_B0040 0.42 +0.6
41,399 + Rru_B0040 0.42 +0.4
41,399 + Rru_B0040 0.42 +0.1
41,399 + Rru_B0040 0.42 +0.3
41,399 + Rru_B0040 0.42 -0.1
41,400 - Rru_B0040 0.42 +0.4
41,400 - Rru_B0040 0.42 +0.1
41,400 - Rru_B0040 0.42 +0.5
41,556 + Rru_B0040 0.53 +0.0
41,556 + Rru_B0040 0.53 -0.0
41,557 - Rru_B0040 0.53 -0.2
41,557 - Rru_B0040 0.53 -2.7
41,557 - Rru_B0040 0.53 -0.2
41,557 - Rru_B0040 0.53 +0.1
41,557 - Rru_B0040 0.53 -0.3
41,557 - Rru_B0040 0.53 +0.2
41,557 - Rru_B0040 0.53 +0.6
41,558 + Rru_B0040 0.53 +0.7
41,559 - Rru_B0040 0.53 -0.2
41,627 + Rru_B0040 0.58 -0.6
41,627 + Rru_B0040 0.58 +1.3
41,627 + Rru_B0040 0.58 +0.0
41,627 + Rru_B0040 0.58 +0.7
41,627 + Rru_B0040 0.58 -0.1
41,628 - Rru_B0040 0.58 +0.8
41,628 - Rru_B0040 0.58 +0.3
41,846 + Rru_B0040 0.73 -0.7
41,846 + Rru_B0040 0.73 +0.1
41,846 + Rru_B0040 0.73 +1.2
42,069 - Rru_B0040 0.88 +0.7
42,078 + Rru_B0040 0.88 -3.2
42,078 + Rru_B0040 0.88 -3.8
42,078 + Rru_B0040 0.88 +0.8
42,078 + Rru_B0040 0.88 +0.7
42,078 + Rru_B0040 0.88 +0.3
42,079 - Rru_B0040 0.88 +0.6
42,079 - Rru_B0040 0.88 -4.1
42,079 - Rru_B0040 0.88 +0.2
42,079 - Rru_B0040 0.88 +1.4
42,081 + Rru_B0040 0.88 -2.0
42,081 + Rru_B0040 0.88 +0.8
42,081 + Rru_B0040 0.88 +0.8
42,081 + Rru_B0040 0.88 +0.9
42,081 + Rru_B0040 0.88 -0.4
42,081 + Rru_B0040 0.88 -0.8
42,081 + Rru_B0040 0.88 +1.5
42,082 - Rru_B0040 0.89 -0.1
42,082 - Rru_B0040 0.89 +0.1
42,082 - Rru_B0040 0.89 +0.5
42,082 - Rru_B0040 0.89 +0.1
42,082 - Rru_B0040 0.89 +1.0
42,082 - Rru_B0040 0.89 +0.1
42,199 - -0.6
42,199 - +0.8
42,199 - -2.0
42,249 + +1.1
42,249 + -1.4
42,250 - -1.1
42,250 - +0.1
42,250 - +0.5
42,250 - +2.1
42,309 + -0.8
42,310 - -0.7
42,318 + +0.5
42,318 + +0.0
42,318 + +1.2
42,318 + +0.7
42,319 - +0.2
42,319 - +0.9
42,319 - +0.3
42,321 + -0.4
42,321 + -0.2
42,321 + -0.7
42,322 - -1.2
42,322 - -0.2
42,326 + +0.7
42,326 + -0.5
42,327 - +0.6
42,327 - -0.1
42,369 + +0.1
42,402 + +0.7
42,402 + +0.1
42,403 - -4.7
42,403 - +1.5
42,534 + Rru_B0041 0.43 -0.6
42,537 + Rru_B0041 0.44 -0.9
42,657 + Rru_B0041 0.83 -0.4
42,657 + Rru_B0041 0.83 +0.6
42,657 + Rru_B0041 0.83 +0.2
42,658 - Rru_B0041 0.83 +0.1
42,672 + Rru_B0041 0.88 -0.6
42,672 + Rru_B0041 0.88 +0.7
42,673 - Rru_B0041 0.88 +0.1
42,673 - Rru_B0041 0.88 +0.2
42,673 - Rru_B0041 0.88 -0.1
42,673 - Rru_B0041 0.88 +0.4
42,708 + -0.3
42,709 - +0.6
42,709 - +0.7
42,727 + -0.2
42,727 + +1.1
42,727 + -1.3
42,727 + +0.3
42,727 + -1.4
42,727 + -0.2
42,728 - -3.4
42,728 - +0.1
42,728 - +0.4
42,728 - +2.2
42,728 - +0.5
42,728 - -0.6
42,728 - -0.9
42,728 - +0.0
42,728 - -3.0
42,728 - +0.5
42,728 - +0.4
42,728 - +0.1
42,728 - +0.4
42,838 + Rru_B0042 0.11 +0.1
42,839 - Rru_B0042 0.11 +0.3
42,839 - Rru_B0042 0.11 -0.1
42,839 - Rru_B0042 0.11 +0.6
42,928 + Rru_B0042 0.21 -0.4
42,928 + Rru_B0042 0.21 +0.5
42,928 + Rru_B0042 0.21 -0.0
42,928 + Rru_B0042 0.21 -1.5
42,928 + Rru_B0042 0.21 -0.6
42,928 + Rru_B0042 0.21 -0.0
42,929 - Rru_B0042 0.22 +0.4
42,929 - Rru_B0042 0.22 +0.8
42,929 - Rru_B0042 0.22 -2.1
42,929 - Rru_B0042 0.22 +0.1
43,409 + Rru_B0042 0.78 -0.0
43,409 + Rru_B0042 0.78 -0.9
43,409 + Rru_B0042 0.78 -0.2
43,410 - Rru_B0042 0.78 -0.6
43,541 + +0.1
43,542 - -0.2

Or see this region's nucleotide sequence