Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0039 and Rru_B0040 are separated by 6 nucleotides Rru_B0040 and Rru_B0041 are separated by 147 nucleotides Rru_B0041 and Rru_B0042 are separated by 34 nucleotides
Rru_B0039: Rru_B0039 - Type I secretion system ATPase, PrtD (NCBI), at 39,009 to 40,766
_B0039
Rru_B0040: Rru_B0040 - Type I secretion membrane fusion protein, HlyD (NCBI), at 40,773 to 42,251
_B0040
Rru_B0041: Rru_B0041 - Transcriptional Regulator, XRE family (NCBI), at 42,399 to 42,710
_B0041
Rru_B0042: Rru_B0042 - hypothetical protein (NCBI), at 42,745 to 43,599
_B0042
Position (kb) 40
41
42
43 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.813 kb on + strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.814 kb on - strand, within Rru_B0039 at 39.942 kb on + strand, within Rru_B0039 at 39.942 kb on + strand, within Rru_B0039 at 39.943 kb on - strand, within Rru_B0039 at 39.943 kb on - strand, within Rru_B0039 at 40.257 kb on + strand, within Rru_B0039 at 40.257 kb on + strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.258 kb on - strand, within Rru_B0039 at 40.399 kb on - strand, within Rru_B0039 at 40.399 kb on - strand, within Rru_B0039 at 40.399 kb on - strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.476 kb on + strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.477 kb on - strand, within Rru_B0039 at 40.478 kb on + strand, within Rru_B0039 at 40.478 kb on + strand, within Rru_B0039 at 40.478 kb on + strand, within Rru_B0039 at 40.479 kb on - strand, within Rru_B0039 at 40.479 kb on - strand, within Rru_B0039 at 40.604 kb on + strand at 40.605 kb on - strand at 40.605 kb on - strand at 40.605 kb on - strand at 40.605 kb on - strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.764 kb on + strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.765 kb on - strand at 40.784 kb on + strand at 40.784 kb on + strand at 40.784 kb on + strand at 40.785 kb on - strand at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.253 kb on + strand, within Rru_B0040 at 41.254 kb on - strand, within Rru_B0040 at 41.254 kb on - strand, within Rru_B0040 at 41.254 kb on - strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.399 kb on + strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.400 kb on - strand, within Rru_B0040 at 41.556 kb on + strand, within Rru_B0040 at 41.556 kb on + strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.557 kb on - strand, within Rru_B0040 at 41.558 kb on + strand, within Rru_B0040 at 41.559 kb on - strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.627 kb on + strand, within Rru_B0040 at 41.628 kb on - strand, within Rru_B0040 at 41.628 kb on - strand, within Rru_B0040 at 41.846 kb on + strand, within Rru_B0040 at 41.846 kb on + strand, within Rru_B0040 at 41.846 kb on + strand, within Rru_B0040 at 42.069 kb on - strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.078 kb on + strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.079 kb on - strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.081 kb on + strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.082 kb on - strand, within Rru_B0040 at 42.199 kb on - strand at 42.199 kb on - strand at 42.199 kb on - strand at 42.249 kb on + strand at 42.249 kb on + strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.250 kb on - strand at 42.309 kb on + strand at 42.310 kb on - strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.318 kb on + strand at 42.319 kb on - strand at 42.319 kb on - strand at 42.319 kb on - strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.321 kb on + strand at 42.322 kb on - strand at 42.322 kb on - strand at 42.326 kb on + strand at 42.326 kb on + strand at 42.327 kb on - strand at 42.327 kb on - strand at 42.369 kb on + strand at 42.402 kb on + strand at 42.402 kb on + strand at 42.403 kb on - strand at 42.403 kb on - strand at 42.534 kb on + strand, within Rru_B0041 at 42.537 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.657 kb on + strand, within Rru_B0041 at 42.658 kb on - strand, within Rru_B0041 at 42.672 kb on + strand, within Rru_B0041 at 42.672 kb on + strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.673 kb on - strand, within Rru_B0041 at 42.708 kb on + strand at 42.709 kb on - strand at 42.709 kb on - strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.727 kb on + strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.728 kb on - strand at 42.838 kb on + strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.839 kb on - strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.928 kb on + strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042 at 42.929 kb on - strand, within Rru_B0042
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 39,813 + Rru_B0039 0.46 +0.7 39,813 + Rru_B0039 0.46 +0.2 39,813 + Rru_B0039 0.46 +0.9 39,813 + Rru_B0039 0.46 +1.1 39,813 + Rru_B0039 0.46 +2.3 39,814 - Rru_B0039 0.46 +0.0 39,814 - Rru_B0039 0.46 -1.4 39,814 - Rru_B0039 0.46 -1.5 39,814 - Rru_B0039 0.46 +0.6 39,942 + Rru_B0039 0.53 +1.8 39,942 + Rru_B0039 0.53 +0.5 39,943 - Rru_B0039 0.53 +1.5 39,943 - Rru_B0039 0.53 -1.3 40,257 + Rru_B0039 0.71 +0.3 40,257 + Rru_B0039 0.71 -0.1 40,258 - Rru_B0039 0.71 -2.1 40,258 - Rru_B0039 0.71 -0.7 40,258 - Rru_B0039 0.71 -0.1 40,258 - Rru_B0039 0.71 -1.3 40,258 - Rru_B0039 0.71 -0.4 40,399 - Rru_B0039 0.79 -1.1 40,399 - Rru_B0039 0.79 -0.1 40,399 - Rru_B0039 0.79 -0.8 40,476 + Rru_B0039 0.83 -0.8 40,476 + Rru_B0039 0.83 +0.4 40,476 + Rru_B0039 0.83 +0.4 40,476 + Rru_B0039 0.83 +1.1 40,477 - Rru_B0039 0.84 +0.5 40,477 - Rru_B0039 0.84 -0.6 40,477 - Rru_B0039 0.84 -0.6 40,477 - Rru_B0039 0.84 -1.1 40,477 - Rru_B0039 0.84 +0.5 40,478 + Rru_B0039 0.84 +0.2 40,478 + Rru_B0039 0.84 -2.0 40,478 + Rru_B0039 0.84 +0.5 40,479 - Rru_B0039 0.84 -0.7 40,479 - Rru_B0039 0.84 -0.3 40,604 + +0.2 40,605 - +0.9 40,605 - -1.9 40,605 - +4.9 40,605 - -1.0 40,764 + -0.1 40,764 + -0.9 40,764 + -0.6 40,764 + -1.2 40,764 + -0.3 40,764 + +0.2 40,764 + +0.9 40,765 - +0.2 40,765 - -1.8 40,765 - +0.3 40,765 - -0.6 40,765 - -0.7 40,765 - -1.1 40,765 - -0.6 40,765 - -0.2 40,765 - -0.0 40,784 + +0.4 40,784 + +1.7 40,784 + -0.4 40,785 - -1.1 41,253 + Rru_B0040 0.32 +0.2 41,253 + Rru_B0040 0.32 +1.1 41,253 + Rru_B0040 0.32 +0.3 41,253 + Rru_B0040 0.32 -0.5 41,253 + Rru_B0040 0.32 +0.5 41,253 + Rru_B0040 0.32 +0.0 41,253 + Rru_B0040 0.32 +0.7 41,253 + Rru_B0040 0.32 +0.2 41,254 - Rru_B0040 0.33 -0.1 41,254 - Rru_B0040 0.33 -0.1 41,254 - Rru_B0040 0.33 +0.3 41,399 + Rru_B0040 0.42 -0.2 41,399 + Rru_B0040 0.42 +0.6 41,399 + Rru_B0040 0.42 +0.6 41,399 + Rru_B0040 0.42 +0.4 41,399 + Rru_B0040 0.42 +0.1 41,399 + Rru_B0040 0.42 +0.3 41,399 + Rru_B0040 0.42 -0.1 41,400 - Rru_B0040 0.42 +0.4 41,400 - Rru_B0040 0.42 +0.1 41,400 - Rru_B0040 0.42 +0.5 41,556 + Rru_B0040 0.53 +0.0 41,556 + Rru_B0040 0.53 -0.0 41,557 - Rru_B0040 0.53 -0.2 41,557 - Rru_B0040 0.53 -2.7 41,557 - Rru_B0040 0.53 -0.2 41,557 - Rru_B0040 0.53 +0.1 41,557 - Rru_B0040 0.53 -0.3 41,557 - Rru_B0040 0.53 +0.2 41,557 - Rru_B0040 0.53 +0.6 41,558 + Rru_B0040 0.53 +0.7 41,559 - Rru_B0040 0.53 -0.2 41,627 + Rru_B0040 0.58 -0.6 41,627 + Rru_B0040 0.58 +1.3 41,627 + Rru_B0040 0.58 +0.0 41,627 + Rru_B0040 0.58 +0.7 41,627 + Rru_B0040 0.58 -0.1 41,628 - Rru_B0040 0.58 +0.8 41,628 - Rru_B0040 0.58 +0.3 41,846 + Rru_B0040 0.73 -0.7 41,846 + Rru_B0040 0.73 +0.1 41,846 + Rru_B0040 0.73 +1.2 42,069 - Rru_B0040 0.88 +0.7 42,078 + Rru_B0040 0.88 -3.2 42,078 + Rru_B0040 0.88 -3.8 42,078 + Rru_B0040 0.88 +0.8 42,078 + Rru_B0040 0.88 +0.7 42,078 + Rru_B0040 0.88 +0.3 42,079 - Rru_B0040 0.88 +0.6 42,079 - Rru_B0040 0.88 -4.1 42,079 - Rru_B0040 0.88 +0.2 42,079 - Rru_B0040 0.88 +1.4 42,081 + Rru_B0040 0.88 -2.0 42,081 + Rru_B0040 0.88 +0.8 42,081 + Rru_B0040 0.88 +0.8 42,081 + Rru_B0040 0.88 +0.9 42,081 + Rru_B0040 0.88 -0.4 42,081 + Rru_B0040 0.88 -0.8 42,081 + Rru_B0040 0.88 +1.5 42,082 - Rru_B0040 0.89 -0.1 42,082 - Rru_B0040 0.89 +0.1 42,082 - Rru_B0040 0.89 +0.5 42,082 - Rru_B0040 0.89 +0.1 42,082 - Rru_B0040 0.89 +1.0 42,082 - Rru_B0040 0.89 +0.1 42,199 - -0.6 42,199 - +0.8 42,199 - -2.0 42,249 + +1.1 42,249 + -1.4 42,250 - -1.1 42,250 - +0.1 42,250 - +0.5 42,250 - +2.1 42,309 + -0.8 42,310 - -0.7 42,318 + +0.5 42,318 + +0.0 42,318 + +1.2 42,318 + +0.7 42,319 - +0.2 42,319 - +0.9 42,319 - +0.3 42,321 + -0.4 42,321 + -0.2 42,321 + -0.7 42,322 - -1.2 42,322 - -0.2 42,326 + +0.7 42,326 + -0.5 42,327 - +0.6 42,327 - -0.1 42,369 + +0.1 42,402 + +0.7 42,402 + +0.1 42,403 - -4.7 42,403 - +1.5 42,534 + Rru_B0041 0.43 -0.6 42,537 + Rru_B0041 0.44 -0.9 42,657 + Rru_B0041 0.83 -0.4 42,657 + Rru_B0041 0.83 +0.6 42,657 + Rru_B0041 0.83 +0.2 42,658 - Rru_B0041 0.83 +0.1 42,672 + Rru_B0041 0.88 -0.6 42,672 + Rru_B0041 0.88 +0.7 42,673 - Rru_B0041 0.88 +0.1 42,673 - Rru_B0041 0.88 +0.2 42,673 - Rru_B0041 0.88 -0.1 42,673 - Rru_B0041 0.88 +0.4 42,708 + -0.3 42,709 - +0.6 42,709 - +0.7 42,727 + -0.2 42,727 + +1.1 42,727 + -1.3 42,727 + +0.3 42,727 + -1.4 42,727 + -0.2 42,728 - -3.4 42,728 - +0.1 42,728 - +0.4 42,728 - +2.2 42,728 - +0.5 42,728 - -0.6 42,728 - -0.9 42,728 - +0.0 42,728 - -3.0 42,728 - +0.5 42,728 - +0.4 42,728 - +0.1 42,728 - +0.4 42,838 + Rru_B0042 0.11 +0.1 42,839 - Rru_B0042 0.11 +0.3 42,839 - Rru_B0042 0.11 -0.1 42,839 - Rru_B0042 0.11 +0.6 42,928 + Rru_B0042 0.21 -0.4 42,928 + Rru_B0042 0.21 +0.5 42,928 + Rru_B0042 0.21 -0.0 42,928 + Rru_B0042 0.21 -1.5 42,928 + Rru_B0042 0.21 -0.6 42,928 + Rru_B0042 0.21 -0.0 42,929 - Rru_B0042 0.22 +0.4 42,929 - Rru_B0042 0.22 +0.8 42,929 - Rru_B0042 0.22 -2.1 42,929 - Rru_B0042 0.22 +0.1
Or see this region's nucleotide sequence