Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2428

Experiment: Spectinomycin 0.0009765625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0009765625 mg/ml
2,498,862	-	petM	Synpcc7942_2426	0.72	+1.5
2,498,902	-				+0.9
2,498,915	-				+2.2
2,498,925	-				-2.1
2,498,968	+				+1.2
2,498,981	+				+0.9
2,498,986	+				-1.1
2,498,989	-				-0.1
2,498,991	+				-1.7
2,499,035	-				-0.1
2,499,054	+				-0.1
2,499,057	-		Synpcc7942_2427	0.10	+0.1
2,499,064	+		Synpcc7942_2427	0.11	-1.3
2,499,068	+		Synpcc7942_2427	0.11	+0.5
2,499,072	-		Synpcc7942_2427	0.12	+0.9
2,499,075	+		Synpcc7942_2427	0.12	+0.5
2,499,076	-				-0.1
2,499,076	-		Synpcc7942_2427	0.12	+0.5
2,499,085	+		Synpcc7942_2427	0.13	+0.8
2,499,098	+		Synpcc7942_2427	0.15	+0.9
2,499,103	+		Synpcc7942_2427	0.16	+1.1
2,499,103	-		Synpcc7942_2427	0.16	+0.5
2,499,104	-		Synpcc7942_2427	0.16	+0.9
2,499,106	-		Synpcc7942_2427	0.16	-1.0
2,499,151	-		Synpcc7942_2427	0.21	+2.0
2,499,173	-		Synpcc7942_2427	0.24	+0.6
2,499,174	-		Synpcc7942_2427	0.24	-0.1
2,499,176	+		Synpcc7942_2427	0.24	+3.7
2,499,190	+		Synpcc7942_2427	0.26	+1.5
2,499,193	-		Synpcc7942_2427	0.26	+0.1
2,499,198	-		Synpcc7942_2427	0.27	+0.9
2,499,198	-		Synpcc7942_2427	0.27	+2.2
2,499,211	-		Synpcc7942_2427	0.28	-0.1
2,499,212	-		Synpcc7942_2427	0.28	-0.5
2,499,237	-		Synpcc7942_2427	0.31	-0.5
2,499,240	+		Synpcc7942_2427	0.32	-0.7
2,499,291	+		Synpcc7942_2427	0.38	-0.1
2,499,301	+		Synpcc7942_2427	0.39	+1.1
2,499,309	-		Synpcc7942_2427	0.40	-0.1
2,499,337	-		Synpcc7942_2427	0.43	-0.1
2,499,367	-		Synpcc7942_2427	0.47	-0.0
2,499,417	-		Synpcc7942_2427	0.53	+1.2
2,499,429	-		Synpcc7942_2427	0.54	+0.3
2,499,461	-		Synpcc7942_2427	0.58	-0.6
2,499,461	-		Synpcc7942_2427	0.58	-0.1
2,499,461	-		Synpcc7942_2427	0.58	+1.1
2,499,464	+		Synpcc7942_2427	0.58	-0.7
2,499,469	+		Synpcc7942_2427	0.59	-1.7
2,499,490	-		Synpcc7942_2427	0.61	-1.1
2,499,511	+		Synpcc7942_2427	0.64	-0.5
2,499,587	+				-1.1
2,499,595	-		Synpcc7942_2427	0.74	+1.7
2,499,601	+		Synpcc7942_2427	0.75	+5.2
2,499,657	-		Synpcc7942_2427	0.81	-0.1
2,499,657	-		Synpcc7942_2427	0.81	+0.1
2,499,667	+		Synpcc7942_2427	0.82	-1.1
2,499,678	-		Synpcc7942_2427	0.84	+0.3
2,499,689	+		Synpcc7942_2427	0.85	-1.6
2,499,699	+		Synpcc7942_2427	0.86	+0.5
2,499,699	+		Synpcc7942_2427	0.86	-0.7
2,499,714	+		Synpcc7942_2427	0.88	-0.1
2,499,714	+		Synpcc7942_2427	0.88	-0.4
2,499,722	-		Synpcc7942_2427	0.89	+1.9
2,499,722	-		Synpcc7942_2427	0.89	+0.5
2,499,740	+				+1.7
2,499,740	+				+0.7
2,499,745	+				+2.3
2,499,745	+				-0.1
2,499,748	-				-0.1
2,499,748	-				+2.6
2,499,753	-				+0.7
2,499,753	-				-1.4
2,499,753	-				+1.9
2,499,777	+				-0.1
2,499,777	-				-0.1
2,499,804	-				+0.1
2,499,848	+		Synpcc7942_2428	0.11	-0.4
2,499,904	+		Synpcc7942_2428	0.24	-1.1
2,499,904	+		Synpcc7942_2428	0.24	-2.1
2,499,926	-		Synpcc7942_2428	0.29	-2.2
2,499,945	-		Synpcc7942_2428	0.33	-1.1
2,499,945	-		Synpcc7942_2428	0.33	-0.1
2,499,945	-		Synpcc7942_2428	0.33	-1.1
2,499,949	+		Synpcc7942_2428	0.34	-0.1
2,499,989	-		Synpcc7942_2428	0.43	-3.1
2,500,009	+		Synpcc7942_2428	0.47	+0.9
2,500,032	+		Synpcc7942_2428	0.52	-0.1
2,500,035	-		Synpcc7942_2428	0.53	-1.4
2,500,040	-		Synpcc7942_2428	0.54	-1.7
2,500,040	-		Synpcc7942_2428	0.54	-1.1
2,500,056	+		Synpcc7942_2428	0.58	+0.9
2,500,056	+		Synpcc7942_2428	0.58	-0.1
2,500,064	-		Synpcc7942_2428	0.60	-2.3
2,500,064	-		Synpcc7942_2428	0.60	-3.5
2,500,064	-		Synpcc7942_2428	0.60	-1.7
2,500,065	+		Synpcc7942_2428	0.60	-1.7
2,500,079	+		Synpcc7942_2428	0.63	-1.1
2,500,090	+		Synpcc7942_2428	0.65	-1.7
2,500,090	+		Synpcc7942_2428	0.65	-2.4
2,500,090	+		Synpcc7942_2428	0.65	+0.9
2,500,098	-		Synpcc7942_2428	0.67	-1.7
2,500,098	-		Synpcc7942_2428	0.67	-0.3
2,500,136	+		Synpcc7942_2428	0.76	-2.1
2,500,136	+		Synpcc7942_2428	0.76	-1.4
2,500,136	+		Synpcc7942_2428	0.76	+0.3
2,500,136	+		Synpcc7942_2428	0.76	-1.1
2,500,136	+		Synpcc7942_2428	0.76	-2.1
2,500,144	-		Synpcc7942_2428	0.77	-1.1
2,500,144	-		Synpcc7942_2428	0.77	-2.1
2,500,169	-		Synpcc7942_2428	0.83	-3.3
2,500,178	-		Synpcc7942_2428	0.85	-0.1
2,500,178	-		Synpcc7942_2428	0.85	-1.1
2,500,204	+				-2.4
2,500,246	+				-0.1
2,500,246	+				-0.1
2,500,254	-				-0.1
2,500,254	-				+1.5
2,500,267	-				-0.1
2,500,309	-				-0.1
2,500,385	+	exbB2	Synpcc7942_2429	0.16	-3.4
2,500,447	+	exbB2	Synpcc7942_2429	0.26	-0.1
2,500,459	+	exbB2	Synpcc7942_2429	0.28	+0.9
2,500,478	+	exbB2	Synpcc7942_2429	0.31	-2.1
2,500,588	+	exbB2	Synpcc7942_2429	0.48	-1.7
2,500,641	+	exbB2	Synpcc7942_2429	0.56	-1.7
2,500,644	+	exbB2	Synpcc7942_2429	0.56	-0.1
2,500,644	+	exbB2	Synpcc7942_2429	0.56	+0.9
2,500,664	+	exbB2	Synpcc7942_2429	0.59	-1.0
2,500,672	-	exbB2	Synpcc7942_2429	0.61	-1.1
2,500,672	-	exbB2	Synpcc7942_2429	0.61	-0.1
2,500,677	-	exbB2	Synpcc7942_2429	0.61	-1.3
2,500,731	-	exbB2	Synpcc7942_2429	0.70	-2.1
2,500,763	-	exbB2	Synpcc7942_2429	0.75	-2.4
2,500,776	+	exbB2	Synpcc7942_2429	0.76	-1.2
2,500,777	+	exbB2	Synpcc7942_2429	0.77	-0.1
2,500,785	-	exbB2	Synpcc7942_2429	0.78	-1.9
2,500,807	+	exbB2	Synpcc7942_2429	0.81	+0.5
2,500,817	+	exbB2	Synpcc7942_2429	0.83	-4.6
2,500,827	+	exbB2	Synpcc7942_2429	0.84	-2.8
2,500,828	+	exbB2	Synpcc7942_2429	0.84	-2.1
2,500,948	+				+1.5
2,501,010	+				-0.1
2,501,015	+				+0.5
2,501,018	-				-0.1
2,501,020	+				-0.1
2,501,020	+				+0.5
2,501,020	+				-0.1
2,501,020	+				-0.4
2,501,020	+				+0.9
2,501,020	+				+0.6
2,501,020	+				+0.9
2,501,020	+				+1.5
2,501,020	+				+0.4
2,501,020	+				-0.1
2,501,028	-				-0.5
2,501,028	-				-0.1
2,501,028	-				+1.2
2,501,028	-				-0.1
2,501,028	-				+0.9
2,501,028	-				+1.5
2,501,028	-				-1.1
2,501,043	-				-1.1
2,501,049	-				-0.1
2,501,051	+				-1.7
2,501,065	-				-0.9
2,501,066	-				-0.7
2,501,086	+		Synpcc7942_2430	0.10	-1.7
2,501,094	-		Synpcc7942_2430	0.11	-0.1
2,501,172	+		Synpcc7942_2430	0.18	+2.2
2,501,172	-		Synpcc7942_2430	0.18	+2.5
2,501,172	-		Synpcc7942_2430	0.18	+1.5
2,501,180	-		Synpcc7942_2430	0.19	+1.5
2,501,180	-		Synpcc7942_2430	0.19	+0.9
2,501,195	+		Synpcc7942_2430	0.20	-0.1
2,501,210	-		Synpcc7942_2430	0.21	+0.7
2,501,243	-		Synpcc7942_2430	0.24	+1.5