Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2264

Experiment: Spectinomycin 0.0009765625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisS and Synpcc7942_2264 are separated by 112 nucleotidesSynpcc7942_2264 and proA are separated by 399 nucleotides Synpcc7942_2263: hisS - histidyl-tRNA synthetase, at 2,331,234 to 2,332,541 hisS Synpcc7942_2264: Synpcc7942_2264 - transcriptional regulator, LuxR family, at 2,332,654 to 2,332,929 _2264 Synpcc7942_2265: proA - glutamate-5-semialdehyde dehydrogenase, at 2,333,329 to 2,334,624 proA Position (kb) 2332 2333Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2332.551 kb on + strandat 2332.561 kb on - strandat 2332.594 kb on - strandat 2332.631 kb on + strandat 2332.636 kb on + strandat 2332.639 kb on - strandat 2332.643 kb on - strandat 2332.652 kb on + strandat 2332.662 kb on - strandat 2332.701 kb on + strand, within Synpcc7942_2264at 2332.709 kb on - strand, within Synpcc7942_2264at 2332.713 kb on + strand, within Synpcc7942_2264at 2332.720 kb on - strand, within Synpcc7942_2264at 2332.738 kb on - strand, within Synpcc7942_2264at 2332.746 kb on - strand, within Synpcc7942_2264at 2332.766 kb on + strand, within Synpcc7942_2264at 2332.771 kb on + strand, within Synpcc7942_2264at 2332.776 kb on + strand, within Synpcc7942_2264at 2332.776 kb on + strand, within Synpcc7942_2264at 2332.800 kb on - strand, within Synpcc7942_2264at 2332.959 kb on - strandat 2332.969 kb on + strandat 2332.969 kb on + strandat 2332.972 kb on - strandat 2333.028 kb on + strandat 2333.028 kb on + strandat 2333.036 kb on - strandat 2333.036 kb on - strandat 2333.073 kb on - strandat 2333.092 kb on + strandat 2333.092 kb on + strandat 2333.098 kb on + strandat 2333.100 kb on - strandat 2333.100 kb on - strandat 2333.100 kb on - strandat 2333.100 kb on - strandat 2333.108 kb on + strandat 2333.108 kb on + strandat 2333.108 kb on + strandat 2333.116 kb on - strandat 2333.116 kb on - strandat 2333.129 kb on - strandat 2333.129 kb on - strandat 2333.144 kb on + strandat 2333.152 kb on - strandat 2333.163 kb on + strandat 2333.163 kb on + strandat 2333.168 kb on + strandat 2333.169 kb on - strandat 2333.189 kb on + strandat 2333.205 kb on - strandat 2333.220 kb on + strandat 2333.231 kb on - strandat 2333.262 kb on - strandat 2333.264 kb on + strandat 2333.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.0009765625 mg/ml
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2,332,551 + +0.6
2,332,561 - -1.1
2,332,594 - -1.1
2,332,631 + -1.1
2,332,636 + -0.1
2,332,639 - +0.7
2,332,643 - -0.1
2,332,652 + -1.8
2,332,662 - -0.1
2,332,701 + Synpcc7942_2264 0.17 -1.1
2,332,709 - Synpcc7942_2264 0.20 -1.5
2,332,713 + Synpcc7942_2264 0.21 -2.4
2,332,720 - Synpcc7942_2264 0.24 -0.5
2,332,738 - Synpcc7942_2264 0.30 +2.9
2,332,746 - Synpcc7942_2264 0.33 -2.1
2,332,766 + Synpcc7942_2264 0.41 -0.7
2,332,771 + Synpcc7942_2264 0.42 -2.1
2,332,776 + Synpcc7942_2264 0.44 -1.1
2,332,776 + Synpcc7942_2264 0.44 -0.1
2,332,800 - Synpcc7942_2264 0.53 -0.1
2,332,959 - -0.1
2,332,969 + -0.1
2,332,969 + -0.1
2,332,972 - +0.9
2,333,028 + +0.9
2,333,028 + -2.1
2,333,036 - -0.5
2,333,036 - -1.7
2,333,073 - -2.1
2,333,092 + +1.5
2,333,092 + +0.9
2,333,098 + -1.1
2,333,100 - +2.2
2,333,100 - -0.1
2,333,100 - -0.1
2,333,100 - -0.1
2,333,108 + +0.5
2,333,108 + -0.1
2,333,108 + -0.1
2,333,116 - -0.7
2,333,116 - -1.4
2,333,129 - -0.5
2,333,129 - +0.6
2,333,144 + -0.1
2,333,152 - +0.7
2,333,163 + -0.3
2,333,163 + -0.7
2,333,168 + +1.1
2,333,169 - -1.1
2,333,189 + -0.1
2,333,205 - +0.9
2,333,220 + -1.7
2,333,231 - -2.1
2,333,262 - -1.7
2,333,264 + -0.4
2,333,272 - +0.9

Or see this region's nucleotide sequence