Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2105

Experiment: Spectinomycin 0.0009765625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0009765625 mg/ml
2,184,225	-		Synpcc7942_2103	0.26	+1.0
2,184,305	-		Synpcc7942_2103	0.46	-1.0
2,184,324	+		Synpcc7942_2103	0.51	-1.0
2,184,335	+		Synpcc7942_2103	0.53	-0.4
2,184,345	+		Synpcc7942_2103	0.56	+1.5
2,184,353	+		Synpcc7942_2103	0.58	+0.5
2,184,408	-		Synpcc7942_2103	0.71	-2.0
2,184,426	+		Synpcc7942_2103	0.76	-0.4
2,184,434	-		Synpcc7942_2103	0.78	+0.4
2,184,468	-		Synpcc7942_2103	0.86	-0.3
2,184,518	+				-0.0
2,184,528	-				+0.4
2,184,562	+				+1.4
2,184,576	-				+1.0
2,184,604	+				-0.0
2,184,606	+				-0.0
2,184,606	+				-0.0
2,184,607	-				+1.0
2,184,612	-				-2.4
2,184,624	-				+1.5
2,184,624	-				+0.8
2,184,631	+				-1.0
2,184,634	-				-1.0
2,184,639	-				+0.3
2,184,696	+				+1.0
2,184,764	-				-0.0
2,184,764	-				+1.3
2,184,795	+	cynS	Synpcc7942_2104	0.12	-0.0
2,184,893	+	cynS	Synpcc7942_2104	0.35	-0.0
2,184,894	+	cynS	Synpcc7942_2104	0.35	+1.4
2,184,894	+	cynS	Synpcc7942_2104	0.35	+1.8
2,184,902	-	cynS	Synpcc7942_2104	0.37	+1.0
2,184,962	+	cynS	Synpcc7942_2104	0.50	+0.5
2,184,971	-	cynS	Synpcc7942_2104	0.52	-0.6
2,184,986	+	cynS	Synpcc7942_2104	0.56	-0.0
2,185,001	-	cynS	Synpcc7942_2104	0.59	-1.0
2,185,010	+	cynS	Synpcc7942_2104	0.61	-2.0
2,185,188	+				+0.4
2,185,190	+				+0.0
2,185,298	-	cynD	Synpcc7942_2105	0.12	-1.4
2,185,312	+	cynD	Synpcc7942_2105	0.14	-0.5
2,185,361	+	cynD	Synpcc7942_2105	0.20	-0.1
2,185,385	+	cynD	Synpcc7942_2105	0.22	-0.1
2,185,388	-	cynD	Synpcc7942_2105	0.23	-0.3
2,185,399	-	cynD	Synpcc7942_2105	0.24	-0.1
2,185,420	-	cynD	Synpcc7942_2105	0.26	+0.4
2,185,468	+	cynD	Synpcc7942_2105	0.32	+0.5
2,185,473	+	cynD	Synpcc7942_2105	0.32	-0.1
2,185,491	+	cynD	Synpcc7942_2105	0.34	+0.5
2,185,525	-	cynD	Synpcc7942_2105	0.38	+1.5
2,185,535	+	cynD	Synpcc7942_2105	0.40	-1.1
2,185,535	+	cynD	Synpcc7942_2105	0.40	-0.1
2,185,535	+	cynD	Synpcc7942_2105	0.40	+0.3
2,185,543	-	cynD	Synpcc7942_2105	0.40	-0.1
2,185,543	-	cynD	Synpcc7942_2105	0.40	+0.9
2,185,559	+	cynD	Synpcc7942_2105	0.42	+0.9
2,185,567	-				-0.1
2,185,569	-	cynD	Synpcc7942_2105	0.43	-0.1
2,185,608	-	cynD	Synpcc7942_2105	0.48	-0.1
2,185,614	-	cynD	Synpcc7942_2105	0.49	-0.1
2,185,619	+	cynD	Synpcc7942_2105	0.49	+1.5
2,185,620	+	cynD	Synpcc7942_2105	0.49	+1.5
2,185,627	-	cynD	Synpcc7942_2105	0.50	+1.5
2,185,664	+	cynD	Synpcc7942_2105	0.54	+1.5
2,185,664	+	cynD	Synpcc7942_2105	0.54	+1.7
2,185,672	-	cynD	Synpcc7942_2105	0.55	+0.9
2,185,672	-	cynD	Synpcc7942_2105	0.55	-1.4
2,185,672	-	cynD	Synpcc7942_2105	0.55	-0.1
2,185,672	-	cynD	Synpcc7942_2105	0.55	-1.3
2,185,735	-	cynD	Synpcc7942_2105	0.63	+0.7
2,185,761	-	cynD	Synpcc7942_2105	0.66	-2.4
2,185,776	+	cynD	Synpcc7942_2105	0.67	-2.1
2,185,842	+	cynD	Synpcc7942_2105	0.75	+0.4
2,186,024	-				+0.2
2,186,116	-				+2.4
2,186,220	+	cynB	Synpcc7942_2106	0.20	-1.1
2,186,231	+	cynB	Synpcc7942_2106	0.21	-1.1
2,186,236	+	cynB	Synpcc7942_2106	0.22	+1.9
2,186,247	-	cynB	Synpcc7942_2106	0.23	-0.6
2,186,249	+	cynB	Synpcc7942_2106	0.23	-0.1
2,186,257	-	cynB	Synpcc7942_2106	0.24	+1.4
2,186,292	+	cynB	Synpcc7942_2106	0.29	+0.6
2,186,292	+	cynB	Synpcc7942_2106	0.29	+0.3
2,186,300	-	cynB	Synpcc7942_2106	0.30	-1.6
2,186,374	+	cynB	Synpcc7942_2106	0.39	-0.8
2,186,390	+	cynB	Synpcc7942_2106	0.41	-1.1
2,186,399	-	cynB	Synpcc7942_2106	0.42	-0.1
2,186,404	-	cynB	Synpcc7942_2106	0.43	+0.9
2,186,406	+	cynB	Synpcc7942_2106	0.43	-0.6
2,186,409	-	cynB	Synpcc7942_2106	0.44	+0.9
2,186,511	-	cynB	Synpcc7942_2106	0.56	+0.5
2,186,512	+	cynB	Synpcc7942_2106	0.57	+0.9
2,186,614	-	cynB	Synpcc7942_2106	0.69	+0.9
2,186,640	-	cynB	Synpcc7942_2106	0.73	-0.1
2,186,843	-				-1.1
2,186,845	-				+0.9
2,186,926	-				+0.9
2,186,985	-				-1.6
2,187,057	-	cynA	Synpcc7942_2107	0.12	-2.1
2,187,057	-	cynA	Synpcc7942_2107	0.12	+0.6