Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1750

Experiment: Spectinomycin 0.0009765625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0009765625 mg/ml
1,819,147	+		Synpcc7942_1748	0.21	+1.5
1,819,150	-		Synpcc7942_1748	0.21	+1.5
1,819,182	+		Synpcc7942_1748	0.25	+1.0
1,819,189	+		Synpcc7942_1748	0.26	-1.1
1,819,196	+		Synpcc7942_1748	0.27	-1.7
1,819,223	+		Synpcc7942_1748	0.31	-1.7
1,819,231	-		Synpcc7942_1748	0.32	+0.5
1,819,231	-		Synpcc7942_1748	0.32	-1.4
1,819,234	+		Synpcc7942_1748	0.32	+0.5
1,819,245	+		Synpcc7942_1748	0.33	-0.1
1,819,251	+		Synpcc7942_1748	0.34	+1.5
1,819,254	-		Synpcc7942_1748	0.35	+0.3
1,819,259	-		Synpcc7942_1748	0.35	+0.9
1,819,264	-		Synpcc7942_1748	0.36	-0.1
1,819,264	-		Synpcc7942_1748	0.36	+0.6
1,819,337	+		Synpcc7942_1748	0.46	-0.1
1,819,337	+		Synpcc7942_1748	0.46	-0.7
1,819,346	+		Synpcc7942_1748	0.47	+0.2
1,819,347	+		Synpcc7942_1748	0.47	-1.5
1,819,347	+		Synpcc7942_1748	0.47	-0.1
1,819,355	-		Synpcc7942_1748	0.48	+0.9
1,819,355	-		Synpcc7942_1748	0.48	+2.2
1,819,355	-		Synpcc7942_1748	0.48	-0.1
1,819,359	+		Synpcc7942_1748	0.48	-0.1
1,819,397	-		Synpcc7942_1748	0.53	+1.3
1,819,408	+		Synpcc7942_1748	0.55	-0.1
1,819,408	+		Synpcc7942_1748	0.55	+0.5
1,819,416	-		Synpcc7942_1748	0.56	-1.1
1,819,416	-		Synpcc7942_1748	0.56	-0.1
1,819,416	-		Synpcc7942_1748	0.56	+0.9
1,819,463	-		Synpcc7942_1748	0.62	+0.5
1,819,475	+		Synpcc7942_1748	0.64	+1.5
1,819,475	+		Synpcc7942_1748	0.64	+0.0
1,819,475	+		Synpcc7942_1748	0.64	-1.5
1,819,477	+		Synpcc7942_1748	0.64	+3.1
1,819,483	-		Synpcc7942_1748	0.65	-0.7
1,819,483	-		Synpcc7942_1748	0.65	-1.1
1,819,483	-		Synpcc7942_1748	0.65	-0.1
1,819,512	-		Synpcc7942_1748	0.69	-2.7
1,819,536	-		Synpcc7942_1748	0.72	-1.1
1,819,550	-		Synpcc7942_1748	0.73	+0.5
1,819,581	+		Synpcc7942_1748	0.78	+1.8
1,819,589	-		Synpcc7942_1748	0.79	-0.3
1,819,618	-		Synpcc7942_1748	0.82	+1.5
1,819,624	+		Synpcc7942_1748	0.83	-0.1
1,819,655	-		Synpcc7942_1748	0.87	+0.9
1,819,659	-		Synpcc7942_1748	0.88	-1.1
1,819,759	-				+1.9
1,819,781	+				+0.1
1,819,801	-	fer	Synpcc7942_1749	0.12	-1.7
1,819,850	+	fer	Synpcc7942_1749	0.24	-1.0
1,819,852	+	fer	Synpcc7942_1749	0.25	+0.4
1,819,852	+	fer	Synpcc7942_1749	0.25	-1.4
1,819,873	+	fer	Synpcc7942_1749	0.30	+1.5
1,819,883	+	fer	Synpcc7942_1749	0.33	-0.1
1,819,891	-	fer	Synpcc7942_1749	0.35	+2.1
1,819,891	-	fer	Synpcc7942_1749	0.35	+0.6
1,819,928	-	fer	Synpcc7942_1749	0.44	-0.1
1,819,946	+	fer	Synpcc7942_1749	0.49	+1.6
1,819,962	+	fer	Synpcc7942_1749	0.53	+2.5
1,819,969	+	fer	Synpcc7942_1749	0.55	-1.5
1,819,970	-	fer	Synpcc7942_1749	0.55	+1.9
1,819,992	+	fer	Synpcc7942_1749	0.61	+1.2
1,820,002	+	fer	Synpcc7942_1749	0.63	-1.7
1,820,007	+	fer	Synpcc7942_1749	0.64	-1.1
1,820,020	+	fer	Synpcc7942_1749	0.68	+2.2
1,820,033	-	fer	Synpcc7942_1749	0.71	+0.2
1,820,047	+	fer	Synpcc7942_1749	0.75	+1.6
1,820,047	+	fer	Synpcc7942_1749	0.75	+0.9
1,820,055	-	fer	Synpcc7942_1749	0.77	-0.1
1,820,059	+	fer	Synpcc7942_1749	0.78	-1.1
1,820,059	+	fer	Synpcc7942_1749	0.78	-1.7
1,820,067	-	fer	Synpcc7942_1749	0.80	-0.1
1,820,142	+				-1.1
1,820,143	+				-2.7
1,820,143	+				+0.2
1,820,149	-				-0.1
1,820,201	-	ycf35	Synpcc7942_1750	0.14	+0.5
1,820,218	+	ycf35	Synpcc7942_1750	0.19	+1.7
1,820,218	-	ycf35	Synpcc7942_1750	0.19	+4.4
1,820,227	-	ycf35	Synpcc7942_1750	0.21	+5.1
1,820,236	+	ycf35	Synpcc7942_1750	0.23	+0.9
1,820,244	-	ycf35	Synpcc7942_1750	0.25	+1.2
1,820,249	-	ycf35	Synpcc7942_1750	0.27	+3.8
1,820,263	-				-0.1
1,820,265	+	ycf35	Synpcc7942_1750	0.31	+3.0
1,820,301	-	ycf35	Synpcc7942_1750	0.40	+0.6
1,820,302	-	ycf35	Synpcc7942_1750	0.40	+1.5
1,820,323	+	ycf35	Synpcc7942_1750	0.46	+0.7
1,820,330	+	ycf35	Synpcc7942_1750	0.48	+4.0
1,820,331	+	ycf35	Synpcc7942_1750	0.48	+2.7
1,820,338	-	ycf35	Synpcc7942_1750	0.50	+1.6
1,820,339	-	ycf35	Synpcc7942_1750	0.50	+0.9
1,820,339	-	ycf35	Synpcc7942_1750	0.50	-0.7
1,820,346	-	ycf35	Synpcc7942_1750	0.52	+3.6
1,820,348	+	ycf35	Synpcc7942_1750	0.52	+1.6
1,820,372	+	ycf35	Synpcc7942_1750	0.58	+3.5
1,820,422	-	ycf35	Synpcc7942_1750	0.71	+1.9
1,820,425	-	ycf35	Synpcc7942_1750	0.72	+1.5
1,820,432	+	ycf35	Synpcc7942_1750	0.74	+3.3
1,820,432	+				-0.1
1,820,432	+	ycf35	Synpcc7942_1750	0.74	+2.4
1,820,440	-	ycf35	Synpcc7942_1750	0.76	+2.0
1,820,493	+	ycf35	Synpcc7942_1750	0.90	+0.8
1,820,518	+				+1.8
1,820,526	-				+0.9
1,820,530	+				+1.9
1,820,545	-				+4.3
1,820,567	-				-2.4
1,820,605	+		Synpcc7942_1751	0.15	-0.4
1,820,641	-		Synpcc7942_1751	0.32	+2.9
1,820,656	-		Synpcc7942_1751	0.40	+1.6
1,820,656	-		Synpcc7942_1751	0.40	+1.1
1,820,662	+		Synpcc7942_1751	0.43	+1.2
1,820,686	+		Synpcc7942_1751	0.54	-0.5
1,820,693	+		Synpcc7942_1751	0.58	-0.8
1,820,693	+		Synpcc7942_1751	0.58	-1.4
1,820,696	-		Synpcc7942_1751	0.59	+1.6
1,820,705	+		Synpcc7942_1751	0.64	+1.8
1,820,886	+				+1.1
1,820,886	+				-1.4
1,820,886	+				-0.5
1,820,886	+				-0.1
1,820,886	+				-3.4
1,820,886	+				-2.1
1,820,894	-				+1.5
1,820,894	-				-0.1
1,820,894	-				-0.1
1,820,894	-				-0.9
1,820,894	-				-0.1
1,820,894	-				-1.9
1,820,898	+				-1.7
1,820,959	+				-0.1
1,820,968	+				-0.8
1,820,974	+				-0.1
1,820,977	+				-0.1
1,820,985	-				-2.1
1,821,017	-				-2.0
1,821,017	-				+0.2
1,821,022	-				-1.7
1,821,022	-				-0.1
1,821,024	+				-1.1
1,821,046	+				-2.4
1,821,290	-		Synpcc7942_1752	0.36	-2.4
1,821,342	-		Synpcc7942_1752	0.43	-2.9
1,821,400	+		Synpcc7942_1752	0.51	-1.1