Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1666

Experiment: Spectinomycin 0.0009765625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_1665 and Synpcc7942_1666 are separated by 50 nucleotidesSynpcc7942_1666 and murD are separated by 105 nucleotides Synpcc7942_1665: Synpcc7942_1665 - probable oxidoreductase, at 1,733,989 to 1,735,104 _1665 Synpcc7942_1666: Synpcc7942_1666 - hypothetical protein, at 1,735,155 to 1,735,859 _1666 Synpcc7942_1667: murD - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase, at 1,735,965 to 1,737,356 murD Position (kb) 1735 1736Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1734.245 kb on - strand, within Synpcc7942_1665at 1734.249 kb on + strand, within Synpcc7942_1665at 1734.249 kb on + strand, within Synpcc7942_1665at 1734.250 kb on - strand, within Synpcc7942_1665at 1734.257 kb on - strandat 1734.262 kb on - strand, within Synpcc7942_1665at 1734.268 kb on - strand, within Synpcc7942_1665at 1734.275 kb on + strand, within Synpcc7942_1665at 1734.293 kb on - strand, within Synpcc7942_1665at 1734.311 kb on - strand, within Synpcc7942_1665at 1734.320 kb on + strand, within Synpcc7942_1665at 1734.330 kb on + strand, within Synpcc7942_1665at 1734.351 kb on + strand, within Synpcc7942_1665at 1734.359 kb on - strand, within Synpcc7942_1665at 1734.379 kb on - strand, within Synpcc7942_1665at 1734.384 kb on + strand, within Synpcc7942_1665at 1734.449 kb on - strand, within Synpcc7942_1665at 1734.449 kb on - strand, within Synpcc7942_1665at 1734.449 kb on - strand, within Synpcc7942_1665at 1734.449 kb on - strand, within Synpcc7942_1665at 1734.472 kb on - strand, within Synpcc7942_1665at 1734.544 kb on + strand, within Synpcc7942_1665at 1734.544 kb on + strand, within Synpcc7942_1665at 1734.599 kb on - strand, within Synpcc7942_1665at 1734.635 kb on + strand, within Synpcc7942_1665at 1734.650 kb on + strand, within Synpcc7942_1665at 1734.657 kb on + strand, within Synpcc7942_1665at 1734.660 kb on - strand, within Synpcc7942_1665at 1734.665 kb on - strand, within Synpcc7942_1665at 1734.728 kb on - strand, within Synpcc7942_1665at 1734.731 kb on + strand, within Synpcc7942_1665at 1734.734 kb on - strand, within Synpcc7942_1665at 1734.740 kb on - strand, within Synpcc7942_1665at 1734.740 kb on - strand, within Synpcc7942_1665at 1734.763 kb on - strand, within Synpcc7942_1665at 1734.774 kb on + strand, within Synpcc7942_1665at 1734.775 kb on - strand, within Synpcc7942_1665at 1734.775 kb on - strand, within Synpcc7942_1665at 1734.782 kb on - strand, within Synpcc7942_1665at 1734.782 kb on - strand, within Synpcc7942_1665at 1734.782 kb on - strand, within Synpcc7942_1665at 1734.814 kb on + strand, within Synpcc7942_1665at 1734.829 kb on + strand, within Synpcc7942_1665at 1734.831 kb on - strand, within Synpcc7942_1665at 1734.836 kb on + strand, within Synpcc7942_1665at 1734.836 kb on + strand, within Synpcc7942_1665at 1734.836 kb on + strand, within Synpcc7942_1665at 1734.837 kb on - strand, within Synpcc7942_1665at 1734.844 kb on - strand, within Synpcc7942_1665at 1734.848 kb on + strand, within Synpcc7942_1665at 1734.862 kb on + strand, within Synpcc7942_1665at 1734.871 kb on + strand, within Synpcc7942_1665at 1734.878 kb on + strand, within Synpcc7942_1665at 1734.884 kb on + strand, within Synpcc7942_1665at 1734.886 kb on - strand, within Synpcc7942_1665at 1734.892 kb on - strand, within Synpcc7942_1665at 1734.894 kb on + strand, within Synpcc7942_1665at 1734.937 kb on + strand, within Synpcc7942_1665at 1734.943 kb on - strand, within Synpcc7942_1665at 1734.956 kb on - strand, within Synpcc7942_1665at 1734.970 kb on + strand, within Synpcc7942_1665at 1734.982 kb on + strand, within Synpcc7942_1665at 1735.007 kb on + strandat 1735.049 kb on - strandat 1735.064 kb on - strandat 1735.068 kb on + strandat 1735.079 kb on + strandat 1735.134 kb on + strandat 1735.139 kb on - strandat 1735.253 kb on - strand, within Synpcc7942_1666at 1735.289 kb on - strand, within Synpcc7942_1666at 1735.297 kb on + strand, within Synpcc7942_1666at 1735.319 kb on - strand, within Synpcc7942_1666at 1735.340 kb on + strand, within Synpcc7942_1666at 1735.340 kb on - strand, within Synpcc7942_1666at 1735.348 kb on - strandat 1735.348 kb on - strand, within Synpcc7942_1666at 1735.393 kb on + strand, within Synpcc7942_1666at 1735.428 kb on + strand, within Synpcc7942_1666at 1735.465 kb on + strand, within Synpcc7942_1666at 1735.465 kb on + strand, within Synpcc7942_1666at 1735.465 kb on + strand, within Synpcc7942_1666at 1735.465 kb on + strand, within Synpcc7942_1666at 1735.465 kb on + strand, within Synpcc7942_1666at 1735.465 kb on + strand, within Synpcc7942_1666at 1735.465 kb on + strand, within Synpcc7942_1666at 1735.465 kb on + strand, within Synpcc7942_1666at 1735.473 kb on - strand, within Synpcc7942_1666at 1735.473 kb on - strand, within Synpcc7942_1666at 1735.473 kb on - strand, within Synpcc7942_1666at 1735.473 kb on - strand, within Synpcc7942_1666at 1735.473 kb on - strand, within Synpcc7942_1666at 1735.483 kb on - strand, within Synpcc7942_1666at 1735.484 kb on - strand, within Synpcc7942_1666at 1735.487 kb on + strand, within Synpcc7942_1666at 1735.487 kb on + strand, within Synpcc7942_1666at 1735.493 kb on - strand, within Synpcc7942_1666at 1735.493 kb on - strand, within Synpcc7942_1666at 1735.493 kb on - strand, within Synpcc7942_1666at 1735.493 kb on - strand, within Synpcc7942_1666at 1735.500 kb on + strand, within Synpcc7942_1666at 1735.507 kb on - strand, within Synpcc7942_1666at 1735.534 kb on + strand, within Synpcc7942_1666at 1735.534 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.544 kb on + strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.552 kb on - strand, within Synpcc7942_1666at 1735.555 kb on + strand, within Synpcc7942_1666at 1735.569 kb on + strand, within Synpcc7942_1666at 1735.587 kb on - strand, within Synpcc7942_1666at 1735.587 kb on - strand, within Synpcc7942_1666at 1735.603 kb on + strand, within Synpcc7942_1666at 1735.603 kb on + strand, within Synpcc7942_1666at 1735.613 kb on - strand, within Synpcc7942_1666at 1735.634 kb on + strand, within Synpcc7942_1666at 1735.636 kb on + strand, within Synpcc7942_1666at 1735.641 kb on - strand, within Synpcc7942_1666at 1735.644 kb on - strand, within Synpcc7942_1666at 1735.644 kb on - strand, within Synpcc7942_1666at 1735.666 kb on - strand, within Synpcc7942_1666at 1735.704 kb on - strand, within Synpcc7942_1666at 1735.727 kb on - strand, within Synpcc7942_1666at 1735.742 kb on + strand, within Synpcc7942_1666at 1735.757 kb on + strand, within Synpcc7942_1666at 1735.772 kb on - strand, within Synpcc7942_1666at 1735.830 kb on + strandat 1735.902 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.0009765625 mg/ml
remove
1,734,245 - Synpcc7942_1665 0.23 -1.5
1,734,249 + Synpcc7942_1665 0.23 -1.1
1,734,249 + Synpcc7942_1665 0.23 -1.1
1,734,250 - Synpcc7942_1665 0.23 -0.5
1,734,257 - -0.1
1,734,262 - Synpcc7942_1665 0.24 -1.7
1,734,268 - Synpcc7942_1665 0.25 -0.9
1,734,275 + Synpcc7942_1665 0.26 -0.4
1,734,293 - Synpcc7942_1665 0.27 -0.1
1,734,311 - Synpcc7942_1665 0.29 +0.9
1,734,320 + Synpcc7942_1665 0.30 +1.9
1,734,330 + Synpcc7942_1665 0.31 -0.1
1,734,351 + Synpcc7942_1665 0.32 -1.8
1,734,359 - Synpcc7942_1665 0.33 +1.5
1,734,379 - Synpcc7942_1665 0.35 +0.9
1,734,384 + Synpcc7942_1665 0.35 -1.1
1,734,449 - Synpcc7942_1665 0.41 -0.9
1,734,449 - Synpcc7942_1665 0.41 -0.7
1,734,449 - Synpcc7942_1665 0.41 -0.1
1,734,449 - Synpcc7942_1665 0.41 +1.0
1,734,472 - Synpcc7942_1665 0.43 -0.1
1,734,544 + Synpcc7942_1665 0.50 -0.3
1,734,544 + Synpcc7942_1665 0.50 -1.1
1,734,599 - Synpcc7942_1665 0.55 -1.7
1,734,635 + Synpcc7942_1665 0.58 -1.4
1,734,650 + Synpcc7942_1665 0.59 -0.1
1,734,657 + Synpcc7942_1665 0.60 +1.1
1,734,660 - Synpcc7942_1665 0.60 -0.4
1,734,665 - Synpcc7942_1665 0.61 -0.6
1,734,728 - Synpcc7942_1665 0.66 +0.9
1,734,731 + Synpcc7942_1665 0.66 +0.5
1,734,734 - Synpcc7942_1665 0.67 +0.2
1,734,740 - Synpcc7942_1665 0.67 +1.5
1,734,740 - Synpcc7942_1665 0.67 +0.8
1,734,763 - Synpcc7942_1665 0.69 +0.7
1,734,774 + Synpcc7942_1665 0.70 -0.5
1,734,775 - Synpcc7942_1665 0.70 -1.8
1,734,775 - Synpcc7942_1665 0.70 +0.6
1,734,782 - Synpcc7942_1665 0.71 -0.7
1,734,782 - Synpcc7942_1665 0.71 +0.9
1,734,782 - Synpcc7942_1665 0.71 -0.1
1,734,814 + Synpcc7942_1665 0.74 -1.1
1,734,829 + Synpcc7942_1665 0.75 -0.1
1,734,831 - Synpcc7942_1665 0.75 -1.7
1,734,836 + Synpcc7942_1665 0.76 -0.1
1,734,836 + Synpcc7942_1665 0.76 +0.9
1,734,836 + Synpcc7942_1665 0.76 -0.5
1,734,837 - Synpcc7942_1665 0.76 +0.5
1,734,844 - Synpcc7942_1665 0.77 -0.7
1,734,848 + Synpcc7942_1665 0.77 -0.1
1,734,862 + Synpcc7942_1665 0.78 +0.9
1,734,871 + Synpcc7942_1665 0.79 -0.3
1,734,878 + Synpcc7942_1665 0.80 +1.2
1,734,884 + Synpcc7942_1665 0.80 -1.1
1,734,886 - Synpcc7942_1665 0.80 +0.9
1,734,892 - Synpcc7942_1665 0.81 -0.5
1,734,894 + Synpcc7942_1665 0.81 -0.7
1,734,937 + Synpcc7942_1665 0.85 -0.1
1,734,943 - Synpcc7942_1665 0.85 +0.9
1,734,956 - Synpcc7942_1665 0.87 -1.1
1,734,970 + Synpcc7942_1665 0.88 +0.3
1,734,982 + Synpcc7942_1665 0.89 -1.1
1,735,007 + -0.4
1,735,049 - -0.1
1,735,064 - +0.4
1,735,068 + -1.1
1,735,079 + -1.1
1,735,134 + -0.7
1,735,139 - +0.4
1,735,253 - Synpcc7942_1666 0.14 -0.1
1,735,289 - Synpcc7942_1666 0.19 -2.5
1,735,297 + Synpcc7942_1666 0.20 -0.9
1,735,319 - Synpcc7942_1666 0.23 -1.1
1,735,340 + Synpcc7942_1666 0.26 -1.0
1,735,340 - Synpcc7942_1666 0.26 +0.9
1,735,348 - -1.1
1,735,348 - Synpcc7942_1666 0.27 -1.5
1,735,393 + Synpcc7942_1666 0.34 +1.5
1,735,428 + Synpcc7942_1666 0.39 -1.4
1,735,465 + Synpcc7942_1666 0.44 +0.9
1,735,465 + Synpcc7942_1666 0.44 -1.1
1,735,465 + Synpcc7942_1666 0.44 -0.1
1,735,465 + Synpcc7942_1666 0.44 -2.0
1,735,465 + Synpcc7942_1666 0.44 -0.1
1,735,465 + Synpcc7942_1666 0.44 -1.7
1,735,465 + Synpcc7942_1666 0.44 -0.1
1,735,465 + Synpcc7942_1666 0.44 +0.1
1,735,473 - Synpcc7942_1666 0.45 -0.4
1,735,473 - Synpcc7942_1666 0.45 -0.1
1,735,473 - Synpcc7942_1666 0.45 -0.1
1,735,473 - Synpcc7942_1666 0.45 -0.5
1,735,473 - Synpcc7942_1666 0.45 -2.6
1,735,483 - Synpcc7942_1666 0.47 -2.1
1,735,484 - Synpcc7942_1666 0.47 -2.5
1,735,487 + Synpcc7942_1666 0.47 -3.4
1,735,487 + Synpcc7942_1666 0.47 -2.5
1,735,493 - Synpcc7942_1666 0.48 -1.1
1,735,493 - Synpcc7942_1666 0.48 -0.5
1,735,493 - Synpcc7942_1666 0.48 -2.3
1,735,493 - Synpcc7942_1666 0.48 -0.1
1,735,500 + Synpcc7942_1666 0.49 -0.1
1,735,507 - Synpcc7942_1666 0.50 -1.2
1,735,534 + Synpcc7942_1666 0.54 -0.7
1,735,534 + Synpcc7942_1666 0.54 +0.9
1,735,544 + Synpcc7942_1666 0.55 +0.9
1,735,544 + Synpcc7942_1666 0.55 -2.7
1,735,544 + Synpcc7942_1666 0.55 -2.1
1,735,544 + Synpcc7942_1666 0.55 -0.5
1,735,544 + Synpcc7942_1666 0.55 -1.0
1,735,544 + Synpcc7942_1666 0.55 -0.1
1,735,544 + Synpcc7942_1666 0.55 -2.1
1,735,544 + Synpcc7942_1666 0.55 -0.1
1,735,544 + Synpcc7942_1666 0.55 -2.7
1,735,544 + Synpcc7942_1666 0.55 -0.1
1,735,544 + Synpcc7942_1666 0.55 -0.5
1,735,544 + Synpcc7942_1666 0.55 -0.1
1,735,544 + Synpcc7942_1666 0.55 -1.7
1,735,544 + Synpcc7942_1666 0.55 -1.1
1,735,544 + Synpcc7942_1666 0.55 -1.7
1,735,544 + Synpcc7942_1666 0.55 +0.3
1,735,544 + Synpcc7942_1666 0.55 -0.1
1,735,544 + Synpcc7942_1666 0.55 -1.1
1,735,544 + Synpcc7942_1666 0.55 -0.1
1,735,544 + Synpcc7942_1666 0.55 -1.1
1,735,544 + Synpcc7942_1666 0.55 -2.1
1,735,544 + Synpcc7942_1666 0.55 -0.9
1,735,544 + Synpcc7942_1666 0.55 -0.1
1,735,552 - Synpcc7942_1666 0.56 +0.9
1,735,552 - Synpcc7942_1666 0.56 -0.1
1,735,552 - Synpcc7942_1666 0.56 -1.1
1,735,552 - Synpcc7942_1666 0.56 -1.1
1,735,552 - Synpcc7942_1666 0.56 -0.1
1,735,552 - Synpcc7942_1666 0.56 +0.3
1,735,552 - Synpcc7942_1666 0.56 -2.5
1,735,552 - Synpcc7942_1666 0.56 -1.1
1,735,552 - Synpcc7942_1666 0.56 -0.1
1,735,552 - Synpcc7942_1666 0.56 -1.1
1,735,552 - Synpcc7942_1666 0.56 -0.1
1,735,552 - Synpcc7942_1666 0.56 -1.7
1,735,552 - Synpcc7942_1666 0.56 -1.1
1,735,552 - Synpcc7942_1666 0.56 -2.5
1,735,552 - Synpcc7942_1666 0.56 -1.7
1,735,552 - Synpcc7942_1666 0.56 -2.1
1,735,552 - Synpcc7942_1666 0.56 -0.1
1,735,552 - Synpcc7942_1666 0.56 -0.1
1,735,552 - Synpcc7942_1666 0.56 -2.6
1,735,552 - Synpcc7942_1666 0.56 -0.1
1,735,552 - Synpcc7942_1666 0.56 -0.9
1,735,552 - Synpcc7942_1666 0.56 +0.9
1,735,555 + Synpcc7942_1666 0.57 -1.7
1,735,569 + Synpcc7942_1666 0.59 -1.1
1,735,587 - Synpcc7942_1666 0.61 +1.5
1,735,587 - Synpcc7942_1666 0.61 -2.1
1,735,603 + Synpcc7942_1666 0.64 -1.7
1,735,603 + Synpcc7942_1666 0.64 -0.3
1,735,613 - Synpcc7942_1666 0.65 -2.5
1,735,634 + Synpcc7942_1666 0.68 -1.9
1,735,636 + Synpcc7942_1666 0.68 -1.5
1,735,641 - Synpcc7942_1666 0.69 -0.1
1,735,644 - Synpcc7942_1666 0.69 -1.1
1,735,644 - Synpcc7942_1666 0.69 -0.1
1,735,666 - Synpcc7942_1666 0.72 -2.2
1,735,704 - Synpcc7942_1666 0.78 -0.1
1,735,727 - Synpcc7942_1666 0.81 +0.5
1,735,742 + Synpcc7942_1666 0.83 -1.7
1,735,757 + Synpcc7942_1666 0.85 -0.7
1,735,772 - Synpcc7942_1666 0.88 -1.1
1,735,830 + -0.1
1,735,902 - +1.9

Or see this region's nucleotide sequence