Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1322

Experiment: Spectinomycin 0.0009765625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0009765625 mg/ml
1,350,619	-		Synpcc7942_1321	0.20	-1.1
1,350,624	-		Synpcc7942_1321	0.21	-0.1
1,350,634	-		Synpcc7942_1321	0.22	-0.7
1,350,643	-		Synpcc7942_1321	0.22	-1.0
1,350,653	-		Synpcc7942_1321	0.23	-0.9
1,350,666	+		Synpcc7942_1321	0.25	+0.9
1,350,674	-		Synpcc7942_1321	0.25	+0.4
1,350,718	+		Synpcc7942_1321	0.30	-1.1
1,350,733	-		Synpcc7942_1321	0.31	-2.3
1,350,741	+		Synpcc7942_1321	0.32	-0.6
1,350,752	+		Synpcc7942_1321	0.33	-0.1
1,350,752	+				-0.7
1,350,760	-		Synpcc7942_1321	0.34	+0.9
1,350,770	-		Synpcc7942_1321	0.35	-1.1
1,350,802	+		Synpcc7942_1321	0.38	-0.6
1,350,802	-		Synpcc7942_1321	0.38	+2.2
1,350,802	-		Synpcc7942_1321	0.38	-1.5
1,350,877	+		Synpcc7942_1321	0.45	-1.7
1,350,877	+		Synpcc7942_1321	0.45	-2.7
1,350,877	+		Synpcc7942_1321	0.45	-1.5
1,350,920	-		Synpcc7942_1321	0.50	-1.1
1,350,945	-		Synpcc7942_1321	0.52	-1.1
1,350,945	-		Synpcc7942_1321	0.52	+1.1
1,350,977	-		Synpcc7942_1321	0.55	-0.1
1,351,043	+		Synpcc7942_1321	0.62	+0.7
1,351,049	+		Synpcc7942_1321	0.62	+0.4
1,351,068	-		Synpcc7942_1321	0.64	-0.4
1,351,095	+		Synpcc7942_1321	0.67	-1.7
1,351,103	+		Synpcc7942_1321	0.68	+1.1
1,351,122	+		Synpcc7942_1321	0.69	-1.1
1,351,149	-		Synpcc7942_1321	0.72	+2.4
1,351,166	+		Synpcc7942_1321	0.74	-0.1
1,351,166	+		Synpcc7942_1321	0.74	+1.9
1,351,174	-		Synpcc7942_1321	0.75	-0.1
1,351,176	-		Synpcc7942_1321	0.75	+1.0
1,351,199	+		Synpcc7942_1321	0.77	+0.9
1,351,207	-		Synpcc7942_1321	0.78	-0.1
1,351,207	-		Synpcc7942_1321	0.78	-1.1
1,351,207	-		Synpcc7942_1321	0.78	+1.4
1,351,207	-		Synpcc7942_1321	0.78	+1.2
1,351,207	-		Synpcc7942_1321	0.78	-0.1
1,351,207	-		Synpcc7942_1321	0.78	-0.7
1,351,207	-		Synpcc7942_1321	0.78	-0.6
1,351,207	-		Synpcc7942_1321	0.78	-0.1
1,351,224	+		Synpcc7942_1321	0.79	-0.1
1,351,226	-		Synpcc7942_1321	0.80	-2.1
1,351,234	+		Synpcc7942_1321	0.80	+0.9
1,351,254	+		Synpcc7942_1321	0.82	+1.9
1,351,271	+		Synpcc7942_1321	0.84	+1.4
1,351,272	-		Synpcc7942_1321	0.84	-1.7
1,351,275	-		Synpcc7942_1321	0.84	+1.4
1,351,279	-		Synpcc7942_1321	0.85	+0.1
1,351,321	+		Synpcc7942_1321	0.89	+2.0
1,351,321	+		Synpcc7942_1321	0.89	-0.1
1,351,321	+		Synpcc7942_1321	0.89	-1.7
1,351,329	-		Synpcc7942_1321	0.90	-1.1
1,351,329	-		Synpcc7942_1321	0.90	+0.9
1,351,357	+				+0.9
1,351,362	-				+1.7
1,351,375	-				+0.9
1,351,378	-				+0.1
1,351,389	+				+0.9
1,351,397	-				-0.5
1,351,423	-				+1.3
1,351,429	+				-0.1
1,351,429	+				-0.3
1,351,429	+				+1.2
1,351,432	-				+0.9
1,351,432	-				-1.7
1,351,437	-				+1.3
1,351,438	-				+1.2
1,351,450	+				+0.9
1,351,470	-				+1.9
1,351,472	+				-0.1
1,351,472	+				-1.1
1,351,480	-				+1.4
1,351,480	-				-1.7
1,351,480	-				+2.3
1,351,537	-				-0.7
1,351,592	-				-1.1
1,351,594	+				-0.1
1,351,610	+				-1.7
1,351,618	-				-0.1
1,351,637	-	psaE	Synpcc7942_1322	0.11	-2.1
1,351,637	-	psaE	Synpcc7942_1322	0.11	+0.9
1,351,687	+	psaE	Synpcc7942_1322	0.32	-0.1
1,351,724	+	psaE	Synpcc7942_1322	0.49	-1.7
1,351,740	+	psaE	Synpcc7942_1322	0.56	-1.1
1,351,830	+				-0.1
1,351,939	+				-0.1
1,351,950	+				-0.1
1,351,950	+				-0.6
1,351,958	-				-0.7
1,351,974	+				-1.1
1,351,980	+				-0.1
1,351,992	-				+1.9
1,352,002	+				+3.2
1,352,011	+				-1.0
1,352,030	+				-1.7
1,352,030	+				+0.9
1,352,030	+				-1.7
1,352,056	+	fpg	Synpcc7942_1323	0.13	-1.2
1,352,057	+	fpg	Synpcc7942_1323	0.13	-0.2
1,352,061	+	fpg	Synpcc7942_1323	0.13	+0.8
1,352,061	+	fpg	Synpcc7942_1323	0.13	+0.4
1,352,061	+	fpg	Synpcc7942_1323	0.13	-1.7
1,352,066	+	fpg	Synpcc7942_1323	0.14	+1.4
1,352,071	+	fpg	Synpcc7942_1323	0.14	+0.4
1,352,071	-	fpg	Synpcc7942_1323	0.14	-1.7
1,352,077	-	fpg	Synpcc7942_1323	0.15	-1.7
1,352,138	+	fpg	Synpcc7942_1323	0.22	+1.4
1,352,143	+	fpg	Synpcc7942_1323	0.23	+0.4
1,352,146	-	fpg	Synpcc7942_1323	0.23	+0.4
1,352,146	-	fpg	Synpcc7942_1323	0.23	-0.2
1,352,167	+	fpg	Synpcc7942_1323	0.26	-0.2
1,352,167	+	fpg	Synpcc7942_1323	0.26	-0.2
1,352,169	+	fpg	Synpcc7942_1323	0.26	+1.5
1,352,208	+	fpg	Synpcc7942_1323	0.31	+0.2
1,352,211	-	fpg	Synpcc7942_1323	0.31	+0.8
1,352,265	-	fpg	Synpcc7942_1323	0.37	+0.4
1,352,265	-				-0.2
1,352,308	+	fpg	Synpcc7942_1323	0.42	-0.7
1,352,313	+	fpg	Synpcc7942_1323	0.43	-2.2
1,352,316	-	fpg	Synpcc7942_1323	0.43	-1.3
1,352,321	-	fpg	Synpcc7942_1323	0.44	-0.5
1,352,378	-	fpg	Synpcc7942_1323	0.51	+1.4
1,352,387	-	fpg	Synpcc7942_1323	0.52	-0.7
1,352,438	-	fpg	Synpcc7942_1323	0.58	+0.3
1,352,472	-	fpg	Synpcc7942_1323	0.62	+1.4
1,352,520	+	fpg	Synpcc7942_1323	0.67	+2.0
1,352,528	-	fpg	Synpcc7942_1323	0.68	-1.2
1,352,535	+	fpg	Synpcc7942_1323	0.69	-1.7
1,352,535	+	fpg	Synpcc7942_1323	0.69	-1.7
1,352,535	+	fpg	Synpcc7942_1323	0.69	-1.2
1,352,543	-	fpg	Synpcc7942_1323	0.70	-0.8
1,352,546	+	fpg	Synpcc7942_1323	0.70	-0.2
1,352,586	+	fpg	Synpcc7942_1323	0.75	-2.5
1,352,607	+	fpg	Synpcc7942_1323	0.78	-1.2
1,352,615	-	fpg	Synpcc7942_1323	0.78	+1.3
1,352,662	-	fpg	Synpcc7942_1323	0.84	+0.8
1,352,687	+	fpg	Synpcc7942_1323	0.87	-1.2
1,352,687	+	fpg	Synpcc7942_1323	0.87	+1.8
1,352,689	-	fpg	Synpcc7942_1323	0.87	+0.8
1,352,695	-	fpg	Synpcc7942_1323	0.88	-0.9
1,352,702	+				-0.2
1,352,718	+				-1.2
1,352,767	+				-0.2
1,352,767	+				-0.2
1,352,775	-				+0.1
1,352,798	-				+1.6
1,352,798	-				+1.1
1,352,798	-				+1.8
1,352,800	-				-0.5
1,352,802	+				+0.4
1,352,825	-				-0.2
1,352,825	-				-1.7
1,352,825	-				+0.8
1,352,827	+				+2.3
1,352,827	+				+0.6
1,352,835	-				-1.2