Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1222

Experiment: Spectinomycin 0.0009765625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0009765625 mg/ml
1,242,306	+	rpl27	Synpcc7942_1220	0.90	-1.8
1,242,366	+				+1.2
1,242,380	-				-0.2
1,242,513	+	cheY	Synpcc7942_1221	0.15	-1.2
1,242,556	+	cheY	Synpcc7942_1221	0.27	-0.4
1,242,563	-	cheY	Synpcc7942_1221	0.29	-0.2
1,242,716	+	cheY	Synpcc7942_1221	0.69	+1.1
1,242,795	-				+0.8
1,242,802	-				-0.2
1,242,814	-				+1.4
1,242,851	-				+0.8
1,242,862	-				-0.2
1,242,886	-				+2.2
1,242,904	+				-0.2
1,242,904	+				+0.8
1,242,912	-				+2.0
1,242,912	-				+1.4
1,242,929	+				+0.9
1,242,937	+				-0.5
1,242,973	+				-1.2
1,242,973	+				+1.8
1,242,973	+				-0.2
1,242,973	+				-0.8
1,242,973	+				+1.8
1,242,973	+				-1.2
1,242,973	+				+2.2
1,242,973	+				+4.5
1,242,981	-				+1.4
1,242,981	-				+2.4
1,242,981	-				+0.4
1,242,981	-				+2.2
1,242,981	-				+1.4
1,242,981	-				+0.4
1,242,981	-				+1.2
1,242,999	-				+0.6
1,243,008	-				+1.7
1,243,032	-	truB	Synpcc7942_1222	0.12	+0.1
1,243,092	+	truB	Synpcc7942_1222	0.19	+2.4
1,243,185	+	truB	Synpcc7942_1222	0.29	+1.8
1,243,288	-	truB	Synpcc7942_1222	0.41	-0.2
1,243,291	-	truB	Synpcc7942_1222	0.41	+2.1
1,243,342	+	truB	Synpcc7942_1222	0.47	+2.2
1,243,345	-	truB	Synpcc7942_1222	0.47	+0.6
1,243,355	-	truB	Synpcc7942_1222	0.49	+0.8
1,243,373	-	truB	Synpcc7942_1222	0.51	-0.2
1,243,436	-	truB	Synpcc7942_1222	0.58	+1.4
1,243,462	+	truB	Synpcc7942_1222	0.61	-0.9
1,243,470	+	truB	Synpcc7942_1222	0.62	+3.2
1,243,470	+	truB	Synpcc7942_1222	0.62	+1.4
1,243,470	+	truB	Synpcc7942_1222	0.62	+1.4
1,243,470	+	truB	Synpcc7942_1222	0.62	+1.2
1,243,478	-	truB	Synpcc7942_1222	0.62	-0.2
1,243,499	+	truB	Synpcc7942_1222	0.65	-0.5
1,243,507	-	truB	Synpcc7942_1222	0.66	+0.1
1,243,515	-	truB	Synpcc7942_1222	0.67	+1.5
1,243,532	+	truB	Synpcc7942_1222	0.69	+1.3
1,243,532	+	truB	Synpcc7942_1222	0.69	+3.5
1,243,532	-				+0.4
1,243,540	-	truB	Synpcc7942_1222	0.69	+1.4
1,243,556	-	truB	Synpcc7942_1222	0.71	+0.4
1,243,567	-	truB	Synpcc7942_1222	0.73	+3.3
1,243,598	-	truB	Synpcc7942_1222	0.76	+0.2
1,243,598	-	truB	Synpcc7942_1222	0.76	+0.8
1,243,638	-	truB	Synpcc7942_1222	0.81	-1.2
1,243,670	+	truB	Synpcc7942_1222	0.84	+0.6
1,243,674	+	truB	Synpcc7942_1222	0.85	+2.4
1,243,704	-	truB	Synpcc7942_1222	0.88	+1.1
1,243,706	+	truB	Synpcc7942_1222	0.88	+0.4
1,243,706	+	truB	Synpcc7942_1222	0.88	+0.8
1,243,719	-	truB	Synpcc7942_1222	0.90	-0.2
1,243,743	+				+1.4
1,243,751	-				+0.6
1,243,751	-				+1.6
1,243,774	-				+2.1
1,243,776	+				-0.8
1,243,782	+				-0.2
1,243,812	-				+1.4
1,243,853	-				-0.8
1,243,906	-				-0.7
1,243,918	-				-1.2
1,243,919	-				+0.4
1,243,938	+				+1.1
1,243,951	-		Synpcc7942_1223	0.10	+0.4
1,243,998	-		Synpcc7942_1223	0.14	+1.4
1,244,034	-		Synpcc7942_1223	0.17	-1.8
1,244,049	-		Synpcc7942_1223	0.19	+1.6
1,244,074	+		Synpcc7942_1223	0.21	+0.8
1,244,074	+		Synpcc7942_1223	0.21	+0.9
1,244,074	+		Synpcc7942_1223	0.21	+0.6
1,244,074	+		Synpcc7942_1223	0.21	-0.2
1,244,101	-		Synpcc7942_1223	0.23	-0.2
1,244,103	-		Synpcc7942_1223	0.23	+1.8
1,244,115	+		Synpcc7942_1223	0.24	-0.2
1,244,170	-		Synpcc7942_1223	0.29	+2.9
1,244,170	-		Synpcc7942_1223	0.29	+0.4
1,244,187	+		Synpcc7942_1223	0.30	-0.6
1,244,187	+		Synpcc7942_1223	0.30	+0.2
1,244,188	-		Synpcc7942_1223	0.30	-1.2
1,244,217	-		Synpcc7942_1223	0.33	-1.3
1,244,264	+		Synpcc7942_1223	0.37	-0.2
1,244,289	+		Synpcc7942_1223	0.39	+0.3
1,244,297	-		Synpcc7942_1223	0.40	-0.5
1,244,309	+		Synpcc7942_1223	0.41	+1.2
1,244,340	-		Synpcc7942_1223	0.43	+2.3
1,244,340	-		Synpcc7942_1223	0.43	+3.1
1,244,355	-		Synpcc7942_1223	0.45	+0.8
1,244,423	-		Synpcc7942_1223	0.50	+1.4
1,244,440	+		Synpcc7942_1223	0.52	-0.2
1,244,602	+		Synpcc7942_1223	0.65	-1.2
1,244,614	+		Synpcc7942_1223	0.66	+0.5
1,244,627	-		Synpcc7942_1223	0.68	-0.2
1,244,628	-		Synpcc7942_1223	0.68	-0.2
1,244,697	+		Synpcc7942_1223	0.74	+1.1
1,244,708	+		Synpcc7942_1223	0.74	+1.8
1,244,732	+		Synpcc7942_1223	0.77	-0.3
1,244,733	+		Synpcc7942_1223	0.77	-0.2
1,244,738	+		Synpcc7942_1223	0.77	+0.8
1,244,741	-		Synpcc7942_1223	0.77	+1.4
1,244,786	-		Synpcc7942_1223	0.81	-0.2
1,244,802	+		Synpcc7942_1223	0.82	+2.2
1,244,802	+		Synpcc7942_1223	0.82	+2.2
1,244,808	-		Synpcc7942_1223	0.83	+0.2