Experiment: Spectinomycin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0914 and aroQ overlap by 4 nucleotides aroQ and Synpcc7942_0916 are separated by 10 nucleotides Synpcc7942_0916 and tRNA-Tyr are separated by 174 nucleotides tRNA-Tyr and tRNA-Thr are separated by 7 nucleotides tRNA-Thr and Synpcc7942_0917 are separated by 209 nucleotides
Synpcc7942_0914: Synpcc7942_0914 - tRNA-(MS(2)IO(6)A)-hydroxylase-like, at 921,780 to 922,391
_0914
Synpcc7942_0915: aroQ - 3-dehydroquinate dehydratase, at 922,388 to 922,837
aroQ
Synpcc7942_0916: Synpcc7942_0916 - hypothetical protein, at 922,848 to 922,976
_0916
Synpcc7942_R0042: tRNA-Tyr - tRNA-Tyr, at 923,151 to 923,235
tRNA-Tyr
Synpcc7942_R0043: tRNA-Thr - tRNA-Thr, at 923,243 to 923,317
tRNA-Thr
Synpcc7942_0917: Synpcc7942_0917 - hypothetical protein, at 923,527 to 923,793
_0917
Position (kb) 922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 921.861 kb on - strand, within Synpcc7942_0914 at 921.861 kb on - strand, within Synpcc7942_0914 at 921.920 kb on + strand, within Synpcc7942_0914 at 921.928 kb on - strand, within Synpcc7942_0914 at 921.930 kb on - strand, within Synpcc7942_0914 at 921.938 kb on - strand, within Synpcc7942_0914 at 921.988 kb on + strand, within Synpcc7942_0914 at 922.000 kb on + strand, within Synpcc7942_0914 at 922.003 kb on - strand, within Synpcc7942_0914 at 922.003 kb on - strand, within Synpcc7942_0914 at 922.054 kb on + strand, within Synpcc7942_0914 at 922.067 kb on + strand, within Synpcc7942_0914 at 922.072 kb on + strand, within Synpcc7942_0914 at 922.072 kb on + strand, within Synpcc7942_0914 at 922.072 kb on + strand, within Synpcc7942_0914 at 922.075 kb on - strand, within Synpcc7942_0914 at 922.077 kb on + strand, within Synpcc7942_0914 at 922.080 kb on - strand, within Synpcc7942_0914 at 922.082 kb on + strand, within Synpcc7942_0914 at 922.095 kb on + strand, within Synpcc7942_0914 at 922.099 kb on + strand, within Synpcc7942_0914 at 922.103 kb on - strand, within Synpcc7942_0914 at 922.132 kb on + strand, within Synpcc7942_0914 at 922.133 kb on - strand, within Synpcc7942_0914 at 922.133 kb on - strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.144 kb on + strand, within Synpcc7942_0914 at 922.152 kb on - strand, within Synpcc7942_0914 at 922.152 kb on - strand, within Synpcc7942_0914 at 922.154 kb on + strand, within Synpcc7942_0914 at 922.162 kb on - strand, within Synpcc7942_0914 at 922.172 kb on + strand, within Synpcc7942_0914 at 922.172 kb on - strand, within Synpcc7942_0914 at 922.180 kb on - strand, within Synpcc7942_0914 at 922.180 kb on - strand, within Synpcc7942_0914 at 922.183 kb on + strand, within Synpcc7942_0914 at 922.186 kb on - strand, within Synpcc7942_0914 at 922.191 kb on - strand, within Synpcc7942_0914 at 922.205 kb on + strand, within Synpcc7942_0914 at 922.213 kb on - strand, within Synpcc7942_0914 at 922.243 kb on - strand, within Synpcc7942_0914 at 922.249 kb on - strand, within Synpcc7942_0914 at 922.271 kb on + strand, within Synpcc7942_0914 at 922.275 kb on - strand, within Synpcc7942_0914 at 922.325 kb on + strand, within Synpcc7942_0914 at 922.333 kb on - strand at 922.338 kb on - strand at 922.370 kb on - strand at 922.379 kb on - strand at 922.379 kb on - strand at 922.387 kb on + strand at 922.846 kb on + strand at 922.867 kb on + strand, within Synpcc7942_0916 at 922.880 kb on + strand, within Synpcc7942_0916 at 922.903 kb on + strand, within Synpcc7942_0916 at 922.989 kb on + strand at 923.051 kb on + strand at 923.059 kb on - strand at 923.059 kb on - strand at 923.061 kb on + strand at 923.062 kb on + strand at 923.072 kb on + strand at 923.348 kb on + strand at 923.348 kb on + strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.356 kb on - strand at 923.368 kb on + strand at 923.381 kb on - strand at 923.408 kb on + strand at 923.409 kb on + strand at 923.409 kb on + strand at 923.416 kb on - strand at 923.416 kb on - strand at 923.416 kb on - strand at 923.417 kb on - strand at 923.438 kb on + strand at 923.438 kb on + strand at 923.446 kb on - strand at 923.446 kb on - strand at 923.498 kb on - strand at 923.512 kb on + strand at 923.512 kb on - strand at 923.517 kb on - strand at 923.520 kb on - strand at 923.523 kb on + strand at 923.525 kb on - strand at 923.549 kb on - strand at 923.552 kb on + strand at 923.559 kb on + strand, within Synpcc7942_0917 at 923.593 kb on - strand, within Synpcc7942_0917 at 923.604 kb on + strand, within Synpcc7942_0917 at 923.618 kb on + strand, within Synpcc7942_0917 at 923.626 kb on - strand, within Synpcc7942_0917 at 923.636 kb on - strand, within Synpcc7942_0917 at 923.659 kb on - strand, within Synpcc7942_0917 at 923.681 kb on - strand, within Synpcc7942_0917 at 923.707 kb on - strand, within Synpcc7942_0917 at 923.719 kb on - strand, within Synpcc7942_0917 at 923.812 kb on - strand at 923.815 kb on - strand at 923.817 kb on + strand at 923.817 kb on + strand at 923.825 kb on - strand at 923.833 kb on - strand at 923.853 kb on - strand at 923.858 kb on - strand at 923.869 kb on + strand at 923.869 kb on + strand at 923.869 kb on + strand at 923.874 kb on + strand at 923.882 kb on - strand at 923.909 kb on + strand at 923.917 kb on - strand at 923.922 kb on + strand at 923.941 kb on + strand at 923.949 kb on - strand at 923.957 kb on - strand at 923.975 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0009765625 mg/ml remove 921,861 - Synpcc7942_0914 0.13 -2.1 921,861 - Synpcc7942_0914 0.13 -1.7 921,920 + Synpcc7942_0914 0.23 +0.5 921,928 - Synpcc7942_0914 0.24 -1.5 921,930 - Synpcc7942_0914 0.25 +1.1 921,938 - Synpcc7942_0914 0.26 +0.7 921,988 + Synpcc7942_0914 0.34 +1.2 922,000 + Synpcc7942_0914 0.36 -0.7 922,003 - Synpcc7942_0914 0.36 -0.9 922,003 - Synpcc7942_0914 0.36 -1.7 922,054 + Synpcc7942_0914 0.45 +0.9 922,067 + Synpcc7942_0914 0.47 -1.7 922,072 + Synpcc7942_0914 0.48 +0.9 922,072 + Synpcc7942_0914 0.48 +0.6 922,072 + Synpcc7942_0914 0.48 -0.1 922,075 - Synpcc7942_0914 0.48 -0.5 922,077 + Synpcc7942_0914 0.49 +0.4 922,080 - Synpcc7942_0914 0.49 -2.1 922,082 + Synpcc7942_0914 0.49 +1.4 922,095 + Synpcc7942_0914 0.51 +2.4 922,099 + Synpcc7942_0914 0.52 -1.7 922,103 - Synpcc7942_0914 0.53 +0.9 922,132 + Synpcc7942_0914 0.58 -0.1 922,133 - Synpcc7942_0914 0.58 +2.2 922,133 - Synpcc7942_0914 0.58 +0.5 922,144 + Synpcc7942_0914 0.59 -2.1 922,144 + Synpcc7942_0914 0.59 +0.9 922,144 + Synpcc7942_0914 0.59 +1.4 922,144 + Synpcc7942_0914 0.59 +0.9 922,144 + Synpcc7942_0914 0.59 -1.1 922,152 - Synpcc7942_0914 0.61 +1.4 922,152 - Synpcc7942_0914 0.61 +1.4 922,154 + Synpcc7942_0914 0.61 +2.7 922,162 - Synpcc7942_0914 0.62 +1.9 922,172 + Synpcc7942_0914 0.64 +1.4 922,172 - Synpcc7942_0914 0.64 +1.9 922,180 - Synpcc7942_0914 0.65 -0.1 922,180 - Synpcc7942_0914 0.65 -0.1 922,183 + Synpcc7942_0914 0.66 -2.7 922,186 - Synpcc7942_0914 0.66 +1.9 922,191 - Synpcc7942_0914 0.67 +0.4 922,205 + Synpcc7942_0914 0.69 -0.1 922,213 - Synpcc7942_0914 0.71 +1.8 922,243 - Synpcc7942_0914 0.76 +0.9 922,249 - Synpcc7942_0914 0.77 -0.1 922,271 + Synpcc7942_0914 0.80 +2.7 922,275 - Synpcc7942_0914 0.81 -0.1 922,325 + Synpcc7942_0914 0.89 -1.1 922,333 - +1.7 922,338 - +0.4 922,370 - +0.2 922,379 - -2.1 922,379 - +0.9 922,387 + -0.1 922,846 + -1.1 922,867 + Synpcc7942_0916 0.15 -1.1 922,880 + Synpcc7942_0916 0.25 -2.1 922,903 + Synpcc7942_0916 0.43 -0.1 922,989 + +0.4 923,051 + -0.1 923,059 - +0.9 923,059 - -0.7 923,061 + -2.5 923,062 + -0.1 923,072 + -0.7 923,348 + +0.4 923,348 + -0.6 923,356 - +0.6 923,356 - -0.1 923,356 - +0.6 923,368 + -1.7 923,381 - -0.6 923,408 + -1.5 923,409 + +0.9 923,409 + -0.7 923,416 - -1.1 923,416 - -0.6 923,416 - -2.9 923,417 - -1.1 923,438 + -1.7 923,438 + -0.1 923,446 - -1.7 923,446 - +0.9 923,498 - -0.6 923,512 + +0.9 923,512 - -1.1 923,517 - -1.1 923,520 - -2.5 923,523 + +0.4 923,525 - -1.9 923,549 - -1.1 923,552 + -1.1 923,559 + Synpcc7942_0917 0.12 -1.1 923,593 - Synpcc7942_0917 0.25 -1.7 923,604 + Synpcc7942_0917 0.29 -0.1 923,618 + Synpcc7942_0917 0.34 +0.9 923,626 - Synpcc7942_0917 0.37 -0.1 923,636 - Synpcc7942_0917 0.41 -1.5 923,659 - Synpcc7942_0917 0.49 -1.5 923,681 - Synpcc7942_0917 0.58 -2.1 923,707 - Synpcc7942_0917 0.67 -1.1 923,719 - Synpcc7942_0917 0.72 -0.1 923,812 - -0.1 923,815 - -2.1 923,817 + +0.9 923,817 + -0.1 923,825 - -1.5 923,833 - +1.4 923,853 - -1.9 923,858 - +0.9 923,869 + -0.9 923,869 + +0.5 923,869 + -0.1 923,874 + -0.9 923,882 - +2.2 923,909 + -0.1 923,917 - -0.1 923,922 + -0.6 923,941 + -2.9 923,949 - +0.9 923,957 - +0.9 923,975 + -0.1
Or see this region's nucleotide sequence