Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0900

Experiment: Spectinomycin 0.0009765625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0899 and gifA are separated by 144 nucleotidesgifA and Synpcc7942_0901 are separated by 136 nucleotides Synpcc7942_0899: Synpcc7942_0899 - hypothetical protein, at 908,498 to 909,295 _0899 Synpcc7942_0900: gifA - hypothetical protein, at 909,440 to 909,643 gifA Synpcc7942_0901: Synpcc7942_0901 - Haloalkane dehalogenase, at 909,780 to 910,676 _0901 Position (kb) 909 910Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 908.457 kb on + strandat 908.503 kb on - strandat 908.505 kb on + strandat 908.508 kb on + strandat 908.521 kb on - strandat 908.531 kb on - strandat 908.533 kb on + strandat 908.533 kb on + strandat 908.544 kb on + strandat 908.547 kb on - strandat 908.549 kb on - strandat 908.563 kb on + strandat 908.575 kb on + strandat 908.591 kb on - strand, within Synpcc7942_0899at 908.681 kb on + strand, within Synpcc7942_0899at 908.681 kb on + strand, within Synpcc7942_0899at 908.681 kb on + strand, within Synpcc7942_0899at 908.696 kb on + strand, within Synpcc7942_0899at 908.755 kb on + strand, within Synpcc7942_0899at 908.758 kb on + strand, within Synpcc7942_0899at 908.766 kb on - strand, within Synpcc7942_0899at 908.846 kb on - strand, within Synpcc7942_0899at 908.860 kb on + strand, within Synpcc7942_0899at 908.865 kb on + strand, within Synpcc7942_0899at 908.868 kb on - strand, within Synpcc7942_0899at 908.876 kb on + strand, within Synpcc7942_0899at 908.922 kb on + strand, within Synpcc7942_0899at 908.922 kb on + strand, within Synpcc7942_0899at 908.922 kb on + strand, within Synpcc7942_0899at 908.938 kb on - strand, within Synpcc7942_0899at 908.955 kb on - strand, within Synpcc7942_0899at 909.117 kb on + strand, within Synpcc7942_0899at 909.117 kb on + strand, within Synpcc7942_0899at 909.120 kb on - strand, within Synpcc7942_0899at 909.122 kb on + strand, within Synpcc7942_0899at 909.122 kb on + strand, within Synpcc7942_0899at 909.125 kb on - strand, within Synpcc7942_0899at 909.125 kb on - strand, within Synpcc7942_0899at 909.150 kb on + strand, within Synpcc7942_0899at 909.165 kb on - strand, within Synpcc7942_0899at 909.179 kb on - strand, within Synpcc7942_0899at 909.186 kb on - strand, within Synpcc7942_0899at 909.213 kb on + strand, within Synpcc7942_0899at 909.229 kb on + strandat 909.254 kb on + strandat 909.254 kb on + strandat 909.254 kb on + strandat 909.269 kb on + strandat 909.403 kb on + strandat 909.411 kb on - strandat 909.419 kb on + strandat 909.439 kb on - strandat 909.443 kb on + strandat 909.451 kb on - strandat 909.461 kb on - strand, within gifAat 909.464 kb on + strand, within gifAat 909.464 kb on + strand, within gifAat 909.472 kb on - strand, within gifAat 909.500 kb on - strand, within gifAat 909.505 kb on - strand, within gifAat 909.505 kb on - strand, within gifAat 909.505 kb on - strand, within gifAat 909.520 kb on - strand, within gifAat 909.540 kb on + strand, within gifAat 909.614 kb on - strand, within gifAat 909.628 kb on + strandat 909.638 kb on + strandat 909.777 kb on + strandat 909.782 kb on + strandat 909.821 kb on + strandat 909.824 kb on - strandat 909.879 kb on + strand, within Synpcc7942_0901at 909.883 kb on + strand, within Synpcc7942_0901at 909.893 kb on + strand, within Synpcc7942_0901at 909.914 kb on - strand, within Synpcc7942_0901at 909.939 kb on + strand, within Synpcc7942_0901at 909.947 kb on - strand, within Synpcc7942_0901at 909.947 kb on - strand, within Synpcc7942_0901at 909.953 kb on - strand, within Synpcc7942_0901at 909.962 kb on + strand, within Synpcc7942_0901at 909.992 kb on - strand, within Synpcc7942_0901at 910.002 kb on + strand, within Synpcc7942_0901at 910.012 kb on + strand, within Synpcc7942_0901at 910.020 kb on - strand, within Synpcc7942_0901at 910.023 kb on + strand, within Synpcc7942_0901at 910.036 kb on + strand, within Synpcc7942_0901at 910.036 kb on + strand, within Synpcc7942_0901at 910.044 kb on - strand, within Synpcc7942_0901at 910.044 kb on - strand, within Synpcc7942_0901at 910.054 kb on - strand, within Synpcc7942_0901at 910.063 kb on + strand, within Synpcc7942_0901at 910.073 kb on - strand, within Synpcc7942_0901at 910.099 kb on + strand, within Synpcc7942_0901at 910.104 kb on + strand, within Synpcc7942_0901at 910.112 kb on - strand, within Synpcc7942_0901at 910.112 kb on - strand, within Synpcc7942_0901at 910.118 kb on - strand, within Synpcc7942_0901at 910.134 kb on + strand, within Synpcc7942_0901at 910.134 kb on + strand, within Synpcc7942_0901at 910.134 kb on + strand, within Synpcc7942_0901at 910.140 kb on + strand, within Synpcc7942_0901at 910.142 kb on - strand, within Synpcc7942_0901at 910.142 kb on - strand, within Synpcc7942_0901at 910.142 kb on - strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.171 kb on + strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.181 kb on - strand, within Synpcc7942_0901at 910.183 kb on - strand, within Synpcc7942_0901at 910.208 kb on + strand, within Synpcc7942_0901at 910.208 kb on + strand, within Synpcc7942_0901at 910.211 kb on - strand, within Synpcc7942_0901at 910.211 kb on - strand, within Synpcc7942_0901at 910.216 kb on - strand, within Synpcc7942_0901at 910.216 kb on - strand, within Synpcc7942_0901at 910.216 kb on - strand, within Synpcc7942_0901at 910.219 kb on - strand, within Synpcc7942_0901at 910.220 kb on + strand, within Synpcc7942_0901at 910.228 kb on - strand, within Synpcc7942_0901at 910.242 kb on + strand, within Synpcc7942_0901at 910.268 kb on + strand, within Synpcc7942_0901at 910.316 kb on - strand, within Synpcc7942_0901at 910.342 kb on + strand, within Synpcc7942_0901at 910.342 kb on + strand, within Synpcc7942_0901at 910.414 kb on + strand, within Synpcc7942_0901at 910.468 kb on + strand, within Synpcc7942_0901at 910.489 kb on - strand, within Synpcc7942_0901at 910.526 kb on + strand, within Synpcc7942_0901at 910.532 kb on + strand, within Synpcc7942_0901at 910.532 kb on + strand, within Synpcc7942_0901at 910.546 kb on - strand, within Synpcc7942_0901

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.0009765625 mg/ml
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908,457 + +0.8
908,503 - +0.9
908,505 + +1.1
908,508 + +1.2
908,521 - +0.6
908,531 - -2.4
908,533 + -0.1
908,533 + -0.1
908,544 + -0.7
908,547 - +0.3
908,549 - -1.7
908,563 + -0.1
908,575 + -0.1
908,591 - Synpcc7942_0899 0.12 -0.1
908,681 + Synpcc7942_0899 0.23 +0.4
908,681 + Synpcc7942_0899 0.23 -0.1
908,681 + Synpcc7942_0899 0.23 -0.1
908,696 + Synpcc7942_0899 0.25 -0.3
908,755 + Synpcc7942_0899 0.32 +2.7
908,758 + Synpcc7942_0899 0.33 -0.1
908,766 - Synpcc7942_0899 0.34 +0.9
908,846 - Synpcc7942_0899 0.44 -0.7
908,860 + Synpcc7942_0899 0.45 +1.0
908,865 + Synpcc7942_0899 0.46 -0.3
908,868 - Synpcc7942_0899 0.46 -0.9
908,876 + Synpcc7942_0899 0.47 -0.1
908,922 + Synpcc7942_0899 0.53 +0.3
908,922 + Synpcc7942_0899 0.53 -1.1
908,922 + Synpcc7942_0899 0.53 -1.7
908,938 - Synpcc7942_0899 0.55 +0.9
908,955 - Synpcc7942_0899 0.57 -0.3
909,117 + Synpcc7942_0899 0.78 -0.1
909,117 + Synpcc7942_0899 0.78 +1.0
909,120 - Synpcc7942_0899 0.78 +1.1
909,122 + Synpcc7942_0899 0.78 +0.7
909,122 + Synpcc7942_0899 0.78 +1.9
909,125 - Synpcc7942_0899 0.79 -1.1
909,125 - Synpcc7942_0899 0.79 -1.1
909,150 + Synpcc7942_0899 0.82 -0.4
909,165 - Synpcc7942_0899 0.84 -2.9
909,179 - Synpcc7942_0899 0.85 +1.9
909,186 - Synpcc7942_0899 0.86 +1.9
909,213 + Synpcc7942_0899 0.90 +2.0
909,229 + -0.5
909,254 + +0.9
909,254 + +0.3
909,254 + +0.9
909,269 + -0.1
909,403 + +1.6
909,411 - +1.4
909,419 + -1.7
909,439 - +1.4
909,443 + +0.0
909,451 - -2.5
909,461 - gifA Synpcc7942_0900 0.10 -0.6
909,464 + gifA Synpcc7942_0900 0.12 +0.9
909,464 + gifA Synpcc7942_0900 0.12 -1.7
909,472 - gifA Synpcc7942_0900 0.16 -0.6
909,500 - gifA Synpcc7942_0900 0.29 -2.1
909,505 - gifA Synpcc7942_0900 0.32 -1.7
909,505 - gifA Synpcc7942_0900 0.32 +0.1
909,505 - gifA Synpcc7942_0900 0.32 -1.1
909,520 - gifA Synpcc7942_0900 0.39 -1.7
909,540 + gifA Synpcc7942_0900 0.49 -0.7
909,614 - gifA Synpcc7942_0900 0.85 -1.7
909,628 + -2.5
909,638 + -1.1
909,777 + +1.2
909,782 + -0.1
909,821 + -1.9
909,824 - +0.2
909,879 + Synpcc7942_0901 0.11 -1.7
909,883 + Synpcc7942_0901 0.11 -0.7
909,893 + Synpcc7942_0901 0.13 -0.1
909,914 - Synpcc7942_0901 0.15 +0.9
909,939 + Synpcc7942_0901 0.18 -0.1
909,947 - Synpcc7942_0901 0.19 +1.0
909,947 - Synpcc7942_0901 0.19 -0.1
909,953 - Synpcc7942_0901 0.19 -0.7
909,962 + Synpcc7942_0901 0.20 -0.1
909,992 - Synpcc7942_0901 0.24 -0.1
910,002 + Synpcc7942_0901 0.25 -1.1
910,012 + Synpcc7942_0901 0.26 +0.9
910,020 - Synpcc7942_0901 0.27 +1.9
910,023 + Synpcc7942_0901 0.27 -0.1
910,036 + Synpcc7942_0901 0.29 -0.1
910,036 + Synpcc7942_0901 0.29 +0.4
910,044 - Synpcc7942_0901 0.29 -1.1
910,044 - Synpcc7942_0901 0.29 -1.5
910,054 - Synpcc7942_0901 0.31 +2.2
910,063 + Synpcc7942_0901 0.32 -1.1
910,073 - Synpcc7942_0901 0.33 -0.9
910,099 + Synpcc7942_0901 0.36 +0.4
910,104 + Synpcc7942_0901 0.36 +0.9
910,112 - Synpcc7942_0901 0.37 +0.3
910,112 - Synpcc7942_0901 0.37 +0.9
910,118 - Synpcc7942_0901 0.38 -1.4
910,134 + Synpcc7942_0901 0.39 -0.1
910,134 + Synpcc7942_0901 0.39 +1.4
910,134 + Synpcc7942_0901 0.39 -0.1
910,140 + Synpcc7942_0901 0.40 -0.5
910,142 - Synpcc7942_0901 0.40 -1.7
910,142 - Synpcc7942_0901 0.40 -0.7
910,142 - Synpcc7942_0901 0.40 +2.4
910,163 + Synpcc7942_0901 0.43 -1.1
910,163 + Synpcc7942_0901 0.43 +1.4
910,163 + Synpcc7942_0901 0.43 -1.1
910,163 + Synpcc7942_0901 0.43 -1.1
910,163 + Synpcc7942_0901 0.43 -1.1
910,171 + Synpcc7942_0901 0.44 -0.6
910,171 - Synpcc7942_0901 0.44 -0.7
910,171 - Synpcc7942_0901 0.44 -0.6
910,171 - Synpcc7942_0901 0.44 -2.9
910,171 - Synpcc7942_0901 0.44 +1.4
910,171 - Synpcc7942_0901 0.44 +2.3
910,171 - Synpcc7942_0901 0.44 +0.3
910,181 - Synpcc7942_0901 0.45 -0.1
910,183 - Synpcc7942_0901 0.45 +0.6
910,208 + Synpcc7942_0901 0.48 +1.0
910,208 + Synpcc7942_0901 0.48 -1.1
910,211 - Synpcc7942_0901 0.48 -1.1
910,211 - Synpcc7942_0901 0.48 -0.4
910,216 - Synpcc7942_0901 0.49 -3.1
910,216 - Synpcc7942_0901 0.49 +0.9
910,216 - Synpcc7942_0901 0.49 -0.1
910,219 - Synpcc7942_0901 0.49 -3.3
910,220 + Synpcc7942_0901 0.49 +0.9
910,228 - Synpcc7942_0901 0.50 +1.9
910,242 + Synpcc7942_0901 0.52 +0.9
910,268 + Synpcc7942_0901 0.54 +1.4
910,316 - Synpcc7942_0901 0.60 -0.1
910,342 + Synpcc7942_0901 0.63 +0.9
910,342 + Synpcc7942_0901 0.63 +3.1
910,414 + Synpcc7942_0901 0.71 +0.9
910,468 + Synpcc7942_0901 0.77 -0.1
910,489 - Synpcc7942_0901 0.79 +0.9
910,526 + Synpcc7942_0901 0.83 +1.4
910,532 + Synpcc7942_0901 0.84 +0.9
910,532 + Synpcc7942_0901 0.84 -0.4
910,546 - Synpcc7942_0901 0.85 -1.1

Or see this region's nucleotide sequence