Experiment: Spectinomycin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0771 and Synpcc7942_0772 are separated by 129 nucleotides Synpcc7942_0772 and ycf52 are separated by 14 nucleotides ycf52 and Synpcc7942_0774 are separated by 18 nucleotides
Synpcc7942_0771: Synpcc7942_0771 - hypothetical protein, at 763,640 to 764,854
_0771
Synpcc7942_0772: Synpcc7942_0772 - hypothetical protein, at 764,984 to 765,577
_0772
Synpcc7942_0773: ycf52 - conserved hypothetical protein YCF52, at 765,592 to 766,197
ycf52
Synpcc7942_0774: Synpcc7942_0774 - esterase, at 766,216 to 767,103
_0774
Position (kb) 765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 764.600 kb on - strand, within Synpcc7942_0771 at 764.613 kb on + strand, within Synpcc7942_0771 at 764.615 kb on + strand, within Synpcc7942_0771 at 764.622 kb on + strand, within Synpcc7942_0771 at 764.659 kb on + strand, within Synpcc7942_0771 at 764.665 kb on + strand, within Synpcc7942_0771 at 764.665 kb on + strand, within Synpcc7942_0771 at 764.673 kb on - strand, within Synpcc7942_0771 at 764.677 kb on + strand, within Synpcc7942_0771 at 764.678 kb on - strand, within Synpcc7942_0771 at 764.678 kb on - strand, within Synpcc7942_0771 at 764.714 kb on + strand, within Synpcc7942_0771 at 764.719 kb on + strand, within Synpcc7942_0771 at 764.719 kb on + strand, within Synpcc7942_0771 at 764.720 kb on - strand, within Synpcc7942_0771 at 764.727 kb on - strand at 764.739 kb on - strand at 764.754 kb on - strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.755 kb on + strand at 764.763 kb on - strand at 764.763 kb on - strand at 764.763 kb on - strand at 764.763 kb on - strand at 764.765 kb on + strand at 764.773 kb on - strand at 764.824 kb on + strand at 764.829 kb on + strand at 764.895 kb on + strand at 764.902 kb on + strand at 764.908 kb on - strand at 764.910 kb on - strand at 764.942 kb on + strand at 764.950 kb on - strand at 764.950 kb on - strand at 764.983 kb on - strand at 765.003 kb on - strand at 765.020 kb on + strand at 765.022 kb on + strand at 765.028 kb on - strand at 765.094 kb on + strand, within Synpcc7942_0772 at 765.114 kb on + strand, within Synpcc7942_0772 at 765.114 kb on - strand, within Synpcc7942_0772 at 765.128 kb on + strand, within Synpcc7942_0772 at 765.153 kb on - strand, within Synpcc7942_0772 at 765.167 kb on - strand, within Synpcc7942_0772 at 765.295 kb on + strand, within Synpcc7942_0772 at 765.308 kb on - strand, within Synpcc7942_0772 at 765.310 kb on - strand, within Synpcc7942_0772 at 765.338 kb on - strand, within Synpcc7942_0772 at 765.338 kb on - strand, within Synpcc7942_0772 at 765.355 kb on - strand, within Synpcc7942_0772 at 765.377 kb on + strand, within Synpcc7942_0772 at 765.390 kb on + strand, within Synpcc7942_0772 at 765.390 kb on + strand, within Synpcc7942_0772 at 765.414 kb on + strand, within Synpcc7942_0772 at 765.420 kb on - strand, within Synpcc7942_0772 at 765.422 kb on - strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.435 kb on + strand, within Synpcc7942_0772 at 765.436 kb on + strand, within Synpcc7942_0772 at 765.456 kb on + strand, within Synpcc7942_0772 at 765.464 kb on - strand, within Synpcc7942_0772 at 765.521 kb on + strand at 765.523 kb on - strand at 765.535 kb on + strand at 765.542 kb on + strand at 765.542 kb on + strand at 765.542 kb on + strand at 765.547 kb on + strand at 765.550 kb on - strand at 765.550 kb on - strand at 765.552 kb on + strand at 765.553 kb on - strand at 765.579 kb on - strand at 765.581 kb on - strand at 765.687 kb on + strand, within ycf52 at 765.701 kb on + strand, within ycf52 at 765.748 kb on + strand, within ycf52 at 765.762 kb on - strand, within ycf52 at 765.786 kb on - strand, within ycf52 at 765.813 kb on + strand, within ycf52 at 765.850 kb on + strand, within ycf52 at 765.856 kb on + strand, within ycf52 at 765.919 kb on + strand, within ycf52 at 765.952 kb on - strand, within ycf52 at 765.952 kb on - strand, within ycf52 at 766.014 kb on - strand, within ycf52 at 766.048 kb on - strand, within ycf52 at 766.085 kb on - strand, within ycf52 at 766.092 kb on - strand, within ycf52 at 766.100 kb on + strand, within ycf52 at 766.101 kb on - strand, within ycf52 at 766.113 kb on - strand, within ycf52 at 766.143 kb on - strand at 766.154 kb on + strand at 766.154 kb on + strand at 766.162 kb on - strand at 766.182 kb on - strand at 766.186 kb on - strand at 766.221 kb on - strand at 766.248 kb on - strand at 766.250 kb on + strand at 766.258 kb on - strand at 766.272 kb on - strand at 766.310 kb on + strand, within Synpcc7942_0774 at 766.322 kb on + strand, within Synpcc7942_0774 at 766.322 kb on + strand, within Synpcc7942_0774 at 766.339 kb on + strand, within Synpcc7942_0774 at 766.354 kb on - strand, within Synpcc7942_0774 at 766.375 kb on - strand, within Synpcc7942_0774 at 766.375 kb on - strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.387 kb on - strand, within Synpcc7942_0774 at 766.387 kb on - strand, within Synpcc7942_0774 at 766.402 kb on - strand, within Synpcc7942_0774 at 766.402 kb on - strand, within Synpcc7942_0774 at 766.415 kb on + strand, within Synpcc7942_0774 at 766.418 kb on - strand, within Synpcc7942_0774 at 766.423 kb on - strand, within Synpcc7942_0774 at 766.423 kb on - strand, within Synpcc7942_0774 at 766.436 kb on - strand, within Synpcc7942_0774 at 766.473 kb on - strand, within Synpcc7942_0774 at 766.482 kb on - strand, within Synpcc7942_0774 at 766.509 kb on + strand, within Synpcc7942_0774 at 766.523 kb on + strand, within Synpcc7942_0774 at 766.535 kb on + strand, within Synpcc7942_0774 at 766.535 kb on + strand, within Synpcc7942_0774 at 766.540 kb on + strand, within Synpcc7942_0774 at 766.543 kb on - strand, within Synpcc7942_0774 at 766.543 kb on - strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.585 kb on - strand, within Synpcc7942_0774 at 766.604 kb on - strand at 766.631 kb on + strand, within Synpcc7942_0774 at 766.803 kb on + strand, within Synpcc7942_0774 at 766.806 kb on - strand, within Synpcc7942_0774 at 766.824 kb on + strand, within Synpcc7942_0774 at 766.903 kb on - strand at 766.921 kb on + strand, within Synpcc7942_0774 at 766.923 kb on - strand, within Synpcc7942_0774 at 766.972 kb on - strand, within Synpcc7942_0774 at 766.975 kb on + strand, within Synpcc7942_0774 at 766.983 kb on - strand, within Synpcc7942_0774 at 767.012 kb on + strand, within Synpcc7942_0774 at 767.032 kb on + strand at 767.065 kb on + strand at 767.068 kb on - strand at 767.073 kb on - strand at 767.073 kb on - strand at 767.097 kb on + strand at 767.105 kb on - strand at 767.107 kb on + strand at 767.128 kb on + strand at 767.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0009765625 mg/ml remove 764,600 - Synpcc7942_0771 0.79 +0.6 764,613 + Synpcc7942_0771 0.80 +0.9 764,615 + Synpcc7942_0771 0.80 -0.4 764,622 + Synpcc7942_0771 0.81 -1.1 764,659 + Synpcc7942_0771 0.84 -0.1 764,665 + Synpcc7942_0771 0.84 -1.1 764,665 + Synpcc7942_0771 0.84 -0.1 764,673 - Synpcc7942_0771 0.85 -1.1 764,677 + Synpcc7942_0771 0.85 +0.2 764,678 - Synpcc7942_0771 0.85 +1.4 764,678 - Synpcc7942_0771 0.85 +2.0 764,714 + Synpcc7942_0771 0.88 -0.5 764,719 + Synpcc7942_0771 0.89 -0.1 764,719 + Synpcc7942_0771 0.89 +0.9 764,720 - Synpcc7942_0771 0.89 +6.6 764,727 - +1.4 764,739 - -1.1 764,754 - +3.0 764,755 + -1.7 764,755 + -1.0 764,755 + -1.1 764,755 + -0.7 764,755 + -0.5 764,755 + +1.3 764,763 - +1.0 764,763 - -0.7 764,763 - +0.9 764,763 - +0.1 764,765 + -2.5 764,773 - -1.1 764,824 + +1.7 764,829 + -0.1 764,895 + -0.1 764,902 + -0.1 764,908 - -0.7 764,910 - +0.9 764,942 + +0.6 764,950 - -2.5 764,950 - -0.7 764,983 - +2.2 765,003 - -1.7 765,020 + +0.6 765,022 + -2.0 765,028 - -0.2 765,094 + Synpcc7942_0772 0.19 +0.4 765,114 + Synpcc7942_0772 0.22 +0.9 765,114 - Synpcc7942_0772 0.22 -0.1 765,128 + Synpcc7942_0772 0.24 +0.9 765,153 - Synpcc7942_0772 0.28 +1.9 765,167 - Synpcc7942_0772 0.31 -0.7 765,295 + Synpcc7942_0772 0.52 -0.3 765,308 - Synpcc7942_0772 0.55 -0.1 765,310 - Synpcc7942_0772 0.55 -0.8 765,338 - Synpcc7942_0772 0.60 -0.5 765,338 - Synpcc7942_0772 0.60 -1.1 765,355 - Synpcc7942_0772 0.62 +1.3 765,377 + Synpcc7942_0772 0.66 -0.5 765,390 + Synpcc7942_0772 0.68 -0.1 765,390 + Synpcc7942_0772 0.68 -0.1 765,414 + Synpcc7942_0772 0.72 -0.6 765,420 - Synpcc7942_0772 0.73 +2.7 765,422 - Synpcc7942_0772 0.74 -0.6 765,424 + Synpcc7942_0772 0.74 +0.4 765,424 + Synpcc7942_0772 0.74 +0.4 765,424 + Synpcc7942_0772 0.74 -1.9 765,424 + Synpcc7942_0772 0.74 +0.9 765,424 + Synpcc7942_0772 0.74 +0.4 765,424 + Synpcc7942_0772 0.74 -2.5 765,424 + Synpcc7942_0772 0.74 +1.9 765,432 - Synpcc7942_0772 0.75 -2.9 765,432 - Synpcc7942_0772 0.75 +0.4 765,432 - Synpcc7942_0772 0.75 +1.0 765,432 - Synpcc7942_0772 0.75 -0.1 765,432 - Synpcc7942_0772 0.75 -1.7 765,432 - Synpcc7942_0772 0.75 -1.1 765,435 + Synpcc7942_0772 0.76 +0.4 765,436 + Synpcc7942_0772 0.76 -0.1 765,456 + Synpcc7942_0772 0.79 -1.1 765,464 - Synpcc7942_0772 0.81 -1.7 765,521 + +1.2 765,523 - -0.6 765,535 + -1.1 765,542 + +1.7 765,542 + -0.7 765,542 + -0.9 765,547 + -0.2 765,550 - +1.0 765,550 - -0.7 765,552 + +0.7 765,553 - +1.3 765,579 - -1.1 765,581 - -0.7 765,687 + ycf52 Synpcc7942_0773 0.16 -2.9 765,701 + ycf52 Synpcc7942_0773 0.18 -1.7 765,748 + ycf52 Synpcc7942_0773 0.26 -2.1 765,762 - ycf52 Synpcc7942_0773 0.28 -2.7 765,786 - ycf52 Synpcc7942_0773 0.32 -3.5 765,813 + ycf52 Synpcc7942_0773 0.36 -1.1 765,850 + ycf52 Synpcc7942_0773 0.43 -2.1 765,856 + ycf52 Synpcc7942_0773 0.44 -0.7 765,919 + ycf52 Synpcc7942_0773 0.54 -1.5 765,952 - ycf52 Synpcc7942_0773 0.59 -3.3 765,952 - ycf52 Synpcc7942_0773 0.59 -2.1 766,014 - ycf52 Synpcc7942_0773 0.70 -0.1 766,048 - ycf52 Synpcc7942_0773 0.75 -2.5 766,085 - ycf52 Synpcc7942_0773 0.81 -0.1 766,092 - ycf52 Synpcc7942_0773 0.83 +1.4 766,100 + ycf52 Synpcc7942_0773 0.84 -0.1 766,101 - ycf52 Synpcc7942_0773 0.84 -1.1 766,113 - ycf52 Synpcc7942_0773 0.86 -3.0 766,143 - -0.1 766,154 + -0.1 766,154 + -0.1 766,162 - -0.9 766,182 - -1.5 766,186 - +1.9 766,221 - +0.2 766,248 - -1.1 766,250 + -3.1 766,258 - -0.1 766,272 - -1.1 766,310 + Synpcc7942_0774 0.11 -0.1 766,322 + Synpcc7942_0774 0.12 -0.7 766,322 + Synpcc7942_0774 0.12 -1.5 766,339 + Synpcc7942_0774 0.14 -0.1 766,354 - Synpcc7942_0774 0.16 -1.5 766,375 - Synpcc7942_0774 0.18 -0.1 766,375 - Synpcc7942_0774 0.18 -0.1 766,379 + Synpcc7942_0774 0.18 -0.1 766,379 + Synpcc7942_0774 0.18 -1.1 766,379 + Synpcc7942_0774 0.18 -1.1 766,379 + Synpcc7942_0774 0.18 -2.7 766,387 - Synpcc7942_0774 0.19 -1.1 766,387 - Synpcc7942_0774 0.19 +0.4 766,402 - Synpcc7942_0774 0.21 -0.6 766,402 - Synpcc7942_0774 0.21 -1.1 766,415 + Synpcc7942_0774 0.22 -1.1 766,418 - Synpcc7942_0774 0.23 -0.1 766,423 - Synpcc7942_0774 0.23 -1.1 766,423 - Synpcc7942_0774 0.23 -1.9 766,436 - Synpcc7942_0774 0.25 -1.7 766,473 - Synpcc7942_0774 0.29 -0.1 766,482 - Synpcc7942_0774 0.30 -1.7 766,509 + Synpcc7942_0774 0.33 -1.7 766,523 + Synpcc7942_0774 0.35 -2.7 766,535 + Synpcc7942_0774 0.36 -1.1 766,535 + Synpcc7942_0774 0.36 -2.9 766,540 + Synpcc7942_0774 0.36 -1.1 766,543 - Synpcc7942_0774 0.37 -1.7 766,543 - Synpcc7942_0774 0.37 -0.1 766,545 + Synpcc7942_0774 0.37 -0.1 766,545 + Synpcc7942_0774 0.37 -1.7 766,545 + Synpcc7942_0774 0.37 +0.3 766,545 + Synpcc7942_0774 0.37 -1.1 766,545 + Synpcc7942_0774 0.37 -1.1 766,553 - Synpcc7942_0774 0.38 -2.1 766,553 - Synpcc7942_0774 0.38 -0.1 766,553 - Synpcc7942_0774 0.38 -0.1 766,553 - Synpcc7942_0774 0.38 +1.9 766,585 - Synpcc7942_0774 0.42 -3.5 766,604 - -0.1 766,631 + Synpcc7942_0774 0.47 +0.9 766,803 + Synpcc7942_0774 0.66 +0.4 766,806 - Synpcc7942_0774 0.66 +1.9 766,824 + Synpcc7942_0774 0.68 -0.1 766,903 - -0.1 766,921 + Synpcc7942_0774 0.79 -0.1 766,923 - Synpcc7942_0774 0.80 -0.1 766,972 - Synpcc7942_0774 0.85 -0.7 766,975 + Synpcc7942_0774 0.85 -2.5 766,983 - Synpcc7942_0774 0.86 -1.1 767,012 + Synpcc7942_0774 0.90 +1.9 767,032 + -0.1 767,065 + -0.1 767,068 - -2.7 767,073 - -0.6 767,073 - -0.6 767,097 + -0.1 767,105 - -1.1 767,107 + -0.1 767,128 + -2.1 767,155 + -0.1
Or see this region's nucleotide sequence