Experiment: Spectinomycin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cad and Synpcc7942_0708 are separated by 66 nucleotides Synpcc7942_0708 and Synpcc7942_0709 are separated by 51 nucleotides Synpcc7942_0709 and Synpcc7942_0710 are separated by 2 nucleotides
Synpcc7942_0707: cad - arginine decarboxylase, at 697,172 to 698,641
cad
Synpcc7942_0708: Synpcc7942_0708 - hypothetical protein, at 698,708 to 700,459
_0708
Synpcc7942_0709: Synpcc7942_0709 - hypothetical protein, at 700,511 to 700,840
_0709
Synpcc7942_0710: Synpcc7942_0710 - hypothetical protein, at 700,843 to 701,538
_0710
Position (kb) 698
699
700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 697.720 kb on + strand, within cad at 697.744 kb on - strand, within cad at 697.828 kb on + strand, within cad at 697.878 kb on - strand, within cad at 697.909 kb on + strand, within cad at 697.914 kb on + strand, within cad at 697.922 kb on - strand, within cad at 697.945 kb on - strand, within cad at 698.042 kb on + strand, within cad at 698.124 kb on + strand, within cad at 698.251 kb on - strand, within cad at 698.412 kb on + strand, within cad at 698.438 kb on - strand, within cad at 698.442 kb on + strand, within cad at 698.530 kb on - strand at 698.531 kb on - strand at 698.599 kb on + strand at 698.645 kb on + strand at 698.645 kb on + strand at 698.715 kb on + strand at 698.722 kb on + strand at 698.762 kb on + strand at 698.762 kb on + strand at 698.786 kb on - strand at 698.838 kb on + strand at 698.876 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.886 kb on - strand, within Synpcc7942_0708 at 698.886 kb on - strand at 698.886 kb on - strand, within Synpcc7942_0708 at 698.886 kb on - strand, within Synpcc7942_0708 at 698.889 kb on + strand, within Synpcc7942_0708 at 698.911 kb on - strand, within Synpcc7942_0708 at 698.919 kb on - strand, within Synpcc7942_0708 at 698.920 kb on + strand, within Synpcc7942_0708 at 698.925 kb on + strand, within Synpcc7942_0708 at 698.955 kb on + strand, within Synpcc7942_0708 at 698.956 kb on + strand, within Synpcc7942_0708 at 698.969 kb on - strand, within Synpcc7942_0708 at 698.989 kb on - strand, within Synpcc7942_0708 at 699.008 kb on - strand, within Synpcc7942_0708 at 699.127 kb on - strand, within Synpcc7942_0708 at 699.149 kb on - strand, within Synpcc7942_0708 at 699.172 kb on - strand, within Synpcc7942_0708 at 699.183 kb on - strand, within Synpcc7942_0708 at 699.229 kb on - strand, within Synpcc7942_0708 at 699.236 kb on - strand, within Synpcc7942_0708 at 699.514 kb on - strand, within Synpcc7942_0708 at 699.635 kb on + strand, within Synpcc7942_0708 at 699.674 kb on + strand, within Synpcc7942_0708 at 699.674 kb on + strand, within Synpcc7942_0708 at 699.674 kb on + strand, within Synpcc7942_0708 at 699.689 kb on + strand, within Synpcc7942_0708 at 699.690 kb on - strand, within Synpcc7942_0708 at 699.696 kb on - strand, within Synpcc7942_0708 at 699.799 kb on + strand, within Synpcc7942_0708 at 699.799 kb on - strand, within Synpcc7942_0708 at 699.809 kb on - strand, within Synpcc7942_0708 at 699.828 kb on + strand, within Synpcc7942_0708 at 699.855 kb on + strand, within Synpcc7942_0708 at 699.862 kb on - strand, within Synpcc7942_0708 at 699.863 kb on - strand, within Synpcc7942_0708 at 699.863 kb on - strand, within Synpcc7942_0708 at 699.866 kb on + strand at 699.879 kb on - strand, within Synpcc7942_0708 at 699.915 kb on + strand, within Synpcc7942_0708 at 699.935 kb on + strand, within Synpcc7942_0708 at 699.984 kb on + strand, within Synpcc7942_0708 at 700.018 kb on - strand, within Synpcc7942_0708 at 700.082 kb on + strand, within Synpcc7942_0708 at 700.090 kb on - strand, within Synpcc7942_0708 at 700.132 kb on - strand, within Synpcc7942_0708 at 700.225 kb on - strand, within Synpcc7942_0708 at 700.262 kb on - strand, within Synpcc7942_0708 at 700.267 kb on + strand, within Synpcc7942_0708 at 700.288 kb on + strand at 700.296 kb on - strand at 700.316 kb on + strand at 700.324 kb on - strand at 700.324 kb on - strand at 700.338 kb on - strand at 700.357 kb on - strand at 700.389 kb on + strand at 700.482 kb on + strand at 700.484 kb on + strand at 700.490 kb on - strand at 700.492 kb on - strand at 700.492 kb on - strand at 700.492 kb on - strand at 700.492 kb on - strand at 700.519 kb on + strand at 700.526 kb on + strand at 700.526 kb on + strand at 700.526 kb on + strand at 700.526 kb on + strand at 700.534 kb on - strand at 700.573 kb on + strand, within Synpcc7942_0709 at 700.607 kb on + strand, within Synpcc7942_0709 at 700.621 kb on + strand, within Synpcc7942_0709 at 700.622 kb on + strand, within Synpcc7942_0709 at 700.631 kb on + strand, within Synpcc7942_0709 at 700.641 kb on - strand, within Synpcc7942_0709 at 700.648 kb on + strand, within Synpcc7942_0709 at 700.746 kb on - strand, within Synpcc7942_0709 at 700.774 kb on + strand, within Synpcc7942_0709 at 700.774 kb on + strand, within Synpcc7942_0709 at 700.774 kb on + strand, within Synpcc7942_0709 at 700.782 kb on - strand, within Synpcc7942_0709 at 700.782 kb on - strand, within Synpcc7942_0709 at 700.782 kb on - strand, within Synpcc7942_0709 at 700.816 kb on + strand at 700.840 kb on + strand at 700.848 kb on - strand at 700.848 kb on - strand at 700.848 kb on - strand at 700.848 kb on - strand at 700.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0009765625 mg/ml remove 697,720 + cad Synpcc7942_0707 0.37 -3.3 697,744 - cad Synpcc7942_0707 0.39 -2.2 697,828 + cad Synpcc7942_0707 0.45 -3.2 697,878 - cad Synpcc7942_0707 0.48 -3.2 697,909 + cad Synpcc7942_0707 0.50 -1.8 697,914 + cad Synpcc7942_0707 0.50 -0.8 697,922 - cad Synpcc7942_0707 0.51 -2.2 697,945 - cad Synpcc7942_0707 0.53 -1.2 698,042 + cad Synpcc7942_0707 0.59 -2.8 698,124 + cad Synpcc7942_0707 0.65 -1.8 698,251 - cad Synpcc7942_0707 0.73 -1.2 698,412 + cad Synpcc7942_0707 0.84 -2.8 698,438 - cad Synpcc7942_0707 0.86 -1.8 698,442 + cad Synpcc7942_0707 0.86 -1.8 698,530 - -2.5 698,531 - -1.8 698,599 + -2.5 698,645 + +0.8 698,645 + +1.4 698,715 + -1.4 698,722 + -2.2 698,762 + -0.4 698,762 + -0.2 698,786 - -0.2 698,838 + -1.2 698,876 + -1.8 698,878 + +0.2 698,878 + -1.2 698,878 + +0.8 698,878 + -2.4 698,878 + +0.4 698,878 + +0.8 698,886 - Synpcc7942_0708 0.10 -1.3 698,886 - -1.2 698,886 - Synpcc7942_0708 0.10 -0.2 698,886 - Synpcc7942_0708 0.10 -0.9 698,889 + Synpcc7942_0708 0.10 -0.2 698,911 - Synpcc7942_0708 0.12 -1.2 698,919 - Synpcc7942_0708 0.12 -0.2 698,920 + Synpcc7942_0708 0.12 -0.2 698,925 + Synpcc7942_0708 0.12 -1.2 698,955 + Synpcc7942_0708 0.14 -1.2 698,956 + Synpcc7942_0708 0.14 -1.5 698,969 - Synpcc7942_0708 0.15 +0.8 698,989 - Synpcc7942_0708 0.16 -0.2 699,008 - Synpcc7942_0708 0.17 -0.2 699,127 - Synpcc7942_0708 0.24 -0.2 699,149 - Synpcc7942_0708 0.25 -1.8 699,172 - Synpcc7942_0708 0.26 -0.2 699,183 - Synpcc7942_0708 0.27 -1.8 699,229 - Synpcc7942_0708 0.30 -0.2 699,236 - Synpcc7942_0708 0.30 -1.2 699,514 - Synpcc7942_0708 0.46 -1.8 699,635 + Synpcc7942_0708 0.53 +1.2 699,674 + Synpcc7942_0708 0.55 -1.8 699,674 + Synpcc7942_0708 0.55 -1.8 699,674 + Synpcc7942_0708 0.55 +0.8 699,689 + Synpcc7942_0708 0.56 -0.2 699,690 - Synpcc7942_0708 0.56 -1.2 699,696 - Synpcc7942_0708 0.56 -2.0 699,799 + Synpcc7942_0708 0.62 -1.5 699,799 - Synpcc7942_0708 0.62 -1.2 699,809 - Synpcc7942_0708 0.63 -0.2 699,828 + Synpcc7942_0708 0.64 -0.2 699,855 + Synpcc7942_0708 0.65 -0.2 699,862 - Synpcc7942_0708 0.66 -1.9 699,863 - Synpcc7942_0708 0.66 -1.5 699,863 - Synpcc7942_0708 0.66 -0.8 699,866 + -0.2 699,879 - Synpcc7942_0708 0.67 -0.2 699,915 + Synpcc7942_0708 0.69 -0.8 699,935 + Synpcc7942_0708 0.70 -1.2 699,984 + Synpcc7942_0708 0.73 -0.2 700,018 - Synpcc7942_0708 0.75 -1.2 700,082 + Synpcc7942_0708 0.78 -1.8 700,090 - Synpcc7942_0708 0.79 -1.8 700,132 - Synpcc7942_0708 0.81 -1.3 700,225 - Synpcc7942_0708 0.87 -0.2 700,262 - Synpcc7942_0708 0.89 -1.8 700,267 + Synpcc7942_0708 0.89 -0.6 700,288 + -0.2 700,296 - -0.2 700,316 + -0.2 700,324 - -1.2 700,324 - -1.8 700,338 - -0.4 700,357 - -0.8 700,389 + -0.2 700,482 + -1.2 700,484 + -0.2 700,490 - -0.2 700,492 - -1.2 700,492 - -0.2 700,492 - -1.2 700,492 - +1.4 700,519 + -1.0 700,526 + -0.2 700,526 + -1.8 700,526 + -0.2 700,526 + +0.4 700,534 - +0.8 700,573 + Synpcc7942_0709 0.19 -0.6 700,607 + Synpcc7942_0709 0.29 +0.2 700,621 + Synpcc7942_0709 0.33 -1.2 700,622 + Synpcc7942_0709 0.34 -3.3 700,631 + Synpcc7942_0709 0.36 -3.3 700,641 - Synpcc7942_0709 0.39 -1.8 700,648 + Synpcc7942_0709 0.42 +0.2 700,746 - Synpcc7942_0709 0.71 -0.3 700,774 + Synpcc7942_0709 0.80 -0.8 700,774 + Synpcc7942_0709 0.80 -0.2 700,774 + Synpcc7942_0709 0.80 +0.7 700,782 - Synpcc7942_0709 0.82 -1.0 700,782 - Synpcc7942_0709 0.82 +1.1 700,782 - Synpcc7942_0709 0.82 -1.2 700,816 + +0.4 700,840 + -1.2 700,848 - -0.2 700,848 - -1.2 700,848 - +0.5 700,848 - -1.8 700,848 - -0.2
Or see this region's nucleotide sequence