Experiment: Spectinomycin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0619 and Synpcc7942_0620 are separated by 77 nucleotides Synpcc7942_0620 and Synpcc7942_0621 are separated by 144 nucleotides Synpcc7942_0621 and Synpcc7942_0622 are separated by 21 nucleotides
Synpcc7942_0619: Synpcc7942_0619 - hypothetical protein, at 609,153 to 609,788
_0619
Synpcc7942_0620: Synpcc7942_0620 - hypothetical protein, at 609,866 to 610,570
_0620
Synpcc7942_0621: Synpcc7942_0621 - hypothetical protein, at 610,715 to 611,893
_0621
Synpcc7942_0622: Synpcc7942_0622 - ATPase, at 611,915 to 613,912
_0622
Position (kb) 610
611
612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 609.724 kb on + strand, within Synpcc7942_0619 at 609.732 kb on - strand at 609.736 kb on + strand at 609.783 kb on + strand at 609.790 kb on - strand at 609.791 kb on - strand at 609.846 kb on - strand at 609.863 kb on - strand at 609.873 kb on - strand at 609.907 kb on - strand at 609.930 kb on - strand at 609.976 kb on + strand, within Synpcc7942_0620 at 609.983 kb on - strand, within Synpcc7942_0620 at 609.988 kb on - strand, within Synpcc7942_0620 at 610.073 kb on - strand at 610.096 kb on + strand, within Synpcc7942_0620 at 610.135 kb on - strand, within Synpcc7942_0620 at 610.149 kb on + strand, within Synpcc7942_0620 at 610.198 kb on + strand, within Synpcc7942_0620 at 610.198 kb on + strand, within Synpcc7942_0620 at 610.209 kb on + strand, within Synpcc7942_0620 at 610.234 kb on + strand, within Synpcc7942_0620 at 610.245 kb on - strand, within Synpcc7942_0620 at 610.267 kb on + strand, within Synpcc7942_0620 at 610.273 kb on + strand, within Synpcc7942_0620 at 610.326 kb on - strand, within Synpcc7942_0620 at 610.326 kb on - strand, within Synpcc7942_0620 at 610.342 kb on - strand, within Synpcc7942_0620 at 610.346 kb on + strand, within Synpcc7942_0620 at 610.354 kb on - strand, within Synpcc7942_0620 at 610.354 kb on - strand, within Synpcc7942_0620 at 610.371 kb on - strand, within Synpcc7942_0620 at 610.401 kb on + strand, within Synpcc7942_0620 at 610.401 kb on + strand, within Synpcc7942_0620 at 610.409 kb on - strand, within Synpcc7942_0620 at 610.409 kb on - strand, within Synpcc7942_0620 at 610.409 kb on - strand, within Synpcc7942_0620 at 610.423 kb on + strand, within Synpcc7942_0620 at 610.423 kb on - strand, within Synpcc7942_0620 at 610.446 kb on + strand, within Synpcc7942_0620 at 610.456 kb on + strand, within Synpcc7942_0620 at 610.456 kb on + strand, within Synpcc7942_0620 at 610.456 kb on + strand, within Synpcc7942_0620 at 610.463 kb on - strand, within Synpcc7942_0620 at 610.464 kb on - strand, within Synpcc7942_0620 at 610.464 kb on - strand, within Synpcc7942_0620 at 610.469 kb on - strand, within Synpcc7942_0620 at 610.477 kb on - strand, within Synpcc7942_0620 at 610.531 kb on + strand at 610.539 kb on - strand at 610.572 kb on - strand at 610.587 kb on + strand at 610.587 kb on + strand at 610.606 kb on - strand at 610.606 kb on - strand at 610.611 kb on + strand at 610.617 kb on + strand at 610.621 kb on + strand at 610.629 kb on - strand at 610.644 kb on + strand at 610.644 kb on + strand at 610.652 kb on - strand at 610.652 kb on - strand at 610.658 kb on + strand at 610.666 kb on - strand at 610.668 kb on + strand at 610.677 kb on - strand at 610.720 kb on - strand at 610.743 kb on + strand at 610.762 kb on - strand at 610.773 kb on + strand at 610.781 kb on - strand at 610.806 kb on - strand at 610.807 kb on - strand at 610.822 kb on - strand at 610.863 kb on - strand, within Synpcc7942_0621 at 610.872 kb on - strand, within Synpcc7942_0621 at 610.874 kb on + strand, within Synpcc7942_0621 at 610.874 kb on + strand, within Synpcc7942_0621 at 610.898 kb on + strand, within Synpcc7942_0621 at 610.906 kb on - strand, within Synpcc7942_0621 at 610.908 kb on - strand, within Synpcc7942_0621 at 610.911 kb on + strand, within Synpcc7942_0621 at 610.939 kb on + strand, within Synpcc7942_0621 at 610.946 kb on - strand, within Synpcc7942_0621 at 610.979 kb on + strand, within Synpcc7942_0621 at 611.008 kb on + strand, within Synpcc7942_0621 at 611.016 kb on - strand, within Synpcc7942_0621 at 611.028 kb on + strand, within Synpcc7942_0621 at 611.028 kb on + strand, within Synpcc7942_0621 at 611.040 kb on + strand, within Synpcc7942_0621 at 611.040 kb on + strand, within Synpcc7942_0621 at 611.048 kb on - strand, within Synpcc7942_0621 at 611.051 kb on + strand, within Synpcc7942_0621 at 611.069 kb on - strand, within Synpcc7942_0621 at 611.137 kb on - strand, within Synpcc7942_0621 at 611.160 kb on - strand, within Synpcc7942_0621 at 611.192 kb on + strand, within Synpcc7942_0621 at 611.195 kb on - strand, within Synpcc7942_0621 at 611.205 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand, within Synpcc7942_0621 at 611.219 kb on + strand at 611.219 kb on + strand, within Synpcc7942_0621 at 611.225 kb on + strand, within Synpcc7942_0621 at 611.225 kb on + strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.227 kb on - strand, within Synpcc7942_0621 at 611.229 kb on - strand, within Synpcc7942_0621 at 611.261 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.306 kb on + strand, within Synpcc7942_0621 at 611.314 kb on - strand, within Synpcc7942_0621 at 611.314 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.321 kb on - strand, within Synpcc7942_0621 at 611.325 kb on + strand, within Synpcc7942_0621 at 611.327 kb on + strand, within Synpcc7942_0621 at 611.353 kb on + strand, within Synpcc7942_0621 at 611.353 kb on + strand, within Synpcc7942_0621 at 611.354 kb on + strand, within Synpcc7942_0621 at 611.360 kb on + strand, within Synpcc7942_0621 at 611.368 kb on + strand, within Synpcc7942_0621 at 611.423 kb on - strand, within Synpcc7942_0621 at 611.437 kb on + strand, within Synpcc7942_0621 at 611.445 kb on - strand, within Synpcc7942_0621 at 611.452 kb on - strand, within Synpcc7942_0621 at 611.452 kb on - strand, within Synpcc7942_0621 at 611.473 kb on + strand, within Synpcc7942_0621 at 611.473 kb on - strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.475 kb on + strand, within Synpcc7942_0621 at 611.490 kb on + strand at 611.491 kb on - strand, within Synpcc7942_0621 at 611.511 kb on - strand, within Synpcc7942_0621 at 611.517 kb on + strand, within Synpcc7942_0621 at 611.530 kb on - strand, within Synpcc7942_0621 at 611.539 kb on + strand, within Synpcc7942_0621 at 611.546 kb on + strand, within Synpcc7942_0621 at 611.630 kb on + strand, within Synpcc7942_0621 at 611.645 kb on + strand, within Synpcc7942_0621 at 611.676 kb on + strand, within Synpcc7942_0621 at 611.676 kb on + strand, within Synpcc7942_0621 at 611.684 kb on - strand, within Synpcc7942_0621 at 611.684 kb on - strand, within Synpcc7942_0621 at 611.715 kb on - strand, within Synpcc7942_0621 at 611.757 kb on - strand, within Synpcc7942_0621 at 611.757 kb on - strand, within Synpcc7942_0621 at 611.808 kb on + strand at 611.862 kb on - strand at 611.864 kb on + strand at 611.872 kb on - strand at 611.884 kb on - strand at 611.886 kb on + strand at 611.889 kb on + strand at 611.894 kb on - strand at 611.896 kb on - strand at 611.915 kb on - strand at 611.973 kb on + strand at 611.992 kb on + strand at 612.072 kb on + strand at 612.268 kb on + strand, within Synpcc7942_0622 at 612.328 kb on + strand, within Synpcc7942_0622 at 612.364 kb on + strand, within Synpcc7942_0622 at 612.441 kb on - strand, within Synpcc7942_0622 at 612.458 kb on + strand, within Synpcc7942_0622 at 612.591 kb on + strand, within Synpcc7942_0622 at 612.599 kb on - strand, within Synpcc7942_0622 at 612.644 kb on - strand, within Synpcc7942_0622 at 612.653 kb on + strand, within Synpcc7942_0622 at 612.726 kb on + strand, within Synpcc7942_0622 at 612.726 kb on + strand, within Synpcc7942_0622 at 612.789 kb on - strand, within Synpcc7942_0622 at 612.801 kb on + strand, within Synpcc7942_0622
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0009765625 mg/ml remove 609,724 + Synpcc7942_0619 0.90 -0.2 609,732 - -1.8 609,736 + -2.2 609,783 + -2.2 609,790 - -0.2 609,791 - -0.2 609,846 - -1.2 609,863 - -0.2 609,873 - -0.2 609,907 - +1.4 609,930 - -1.2 609,976 + Synpcc7942_0620 0.16 +1.4 609,983 - Synpcc7942_0620 0.17 -0.4 609,988 - Synpcc7942_0620 0.17 -1.2 610,073 - +0.8 610,096 + Synpcc7942_0620 0.33 -0.2 610,135 - Synpcc7942_0620 0.38 +0.2 610,149 + Synpcc7942_0620 0.40 -1.2 610,198 + Synpcc7942_0620 0.47 +3.5 610,198 + Synpcc7942_0620 0.47 -1.2 610,209 + Synpcc7942_0620 0.49 -0.2 610,234 + Synpcc7942_0620 0.52 -0.2 610,245 - Synpcc7942_0620 0.54 +2.1 610,267 + Synpcc7942_0620 0.57 -1.2 610,273 + Synpcc7942_0620 0.58 +1.1 610,326 - Synpcc7942_0620 0.65 +0.8 610,326 - Synpcc7942_0620 0.65 -1.2 610,342 - Synpcc7942_0620 0.68 +0.5 610,346 + Synpcc7942_0620 0.68 +0.1 610,354 - Synpcc7942_0620 0.69 +0.9 610,354 - Synpcc7942_0620 0.69 -0.2 610,371 - Synpcc7942_0620 0.72 +1.1 610,401 + Synpcc7942_0620 0.76 -0.5 610,401 + Synpcc7942_0620 0.76 -0.2 610,409 - Synpcc7942_0620 0.77 -2.5 610,409 - Synpcc7942_0620 0.77 +0.1 610,409 - Synpcc7942_0620 0.77 -1.2 610,423 + Synpcc7942_0620 0.79 -3.2 610,423 - Synpcc7942_0620 0.79 -0.2 610,446 + Synpcc7942_0620 0.82 -0.2 610,456 + Synpcc7942_0620 0.84 -1.2 610,456 + Synpcc7942_0620 0.84 +0.8 610,456 + Synpcc7942_0620 0.84 +1.3 610,463 - Synpcc7942_0620 0.85 -2.2 610,464 - Synpcc7942_0620 0.85 -1.8 610,464 - Synpcc7942_0620 0.85 +0.8 610,469 - Synpcc7942_0620 0.86 -2.2 610,477 - Synpcc7942_0620 0.87 +0.4 610,531 + +0.8 610,539 - +1.8 610,572 - -2.2 610,587 + -0.2 610,587 + +1.1 610,606 - -0.2 610,606 - +0.6 610,611 + -0.7 610,617 + +1.9 610,621 + -0.2 610,629 - +0.8 610,644 + +0.8 610,644 + +1.3 610,652 - -0.2 610,652 - +2.4 610,658 + +0.4 610,666 - +1.0 610,668 + +2.0 610,677 - +1.8 610,720 - -1.2 610,743 + +1.9 610,762 - +3.1 610,773 + +1.7 610,781 - +2.1 610,806 - -0.2 610,807 - +1.4 610,822 - +0.2 610,863 - Synpcc7942_0621 0.13 +2.9 610,872 - Synpcc7942_0621 0.13 +2.4 610,874 + Synpcc7942_0621 0.13 +2.3 610,874 + Synpcc7942_0621 0.13 +3.1 610,898 + Synpcc7942_0621 0.16 +3.1 610,906 - Synpcc7942_0621 0.16 +2.8 610,908 - Synpcc7942_0621 0.16 +3.0 610,911 + Synpcc7942_0621 0.17 +0.8 610,939 + Synpcc7942_0621 0.19 +0.6 610,946 - Synpcc7942_0621 0.20 +0.8 610,979 + Synpcc7942_0621 0.22 +4.7 611,008 + Synpcc7942_0621 0.25 +2.1 611,016 - Synpcc7942_0621 0.26 +1.4 611,028 + Synpcc7942_0621 0.27 +2.8 611,028 + Synpcc7942_0621 0.27 +2.9 611,040 + Synpcc7942_0621 0.28 +2.8 611,040 + Synpcc7942_0621 0.28 +2.7 611,048 - Synpcc7942_0621 0.28 +3.3 611,051 + Synpcc7942_0621 0.28 +2.4 611,069 - Synpcc7942_0621 0.30 +0.8 611,137 - Synpcc7942_0621 0.36 +0.5 611,160 - Synpcc7942_0621 0.38 -0.2 611,192 + Synpcc7942_0621 0.40 -0.2 611,195 - Synpcc7942_0621 0.41 +1.1 611,205 + Synpcc7942_0621 0.42 +2.3 611,219 + Synpcc7942_0621 0.43 +1.8 611,219 + Synpcc7942_0621 0.43 -0.0 611,219 + Synpcc7942_0621 0.43 +3.2 611,219 + Synpcc7942_0621 0.43 +3.7 611,219 + +4.5 611,219 + Synpcc7942_0621 0.43 +3.1 611,225 + Synpcc7942_0621 0.43 +3.7 611,225 + Synpcc7942_0621 0.43 +1.6 611,227 - Synpcc7942_0621 0.43 +1.2 611,227 - Synpcc7942_0621 0.43 +0.8 611,227 - Synpcc7942_0621 0.43 +1.4 611,227 - Synpcc7942_0621 0.43 -1.8 611,227 - Synpcc7942_0621 0.43 +3.1 611,227 - Synpcc7942_0621 0.43 +3.1 611,227 - Synpcc7942_0621 0.43 +1.1 611,227 - Synpcc7942_0621 0.43 +1.0 611,227 - Synpcc7942_0621 0.43 +1.4 611,227 - Synpcc7942_0621 0.43 +0.2 611,227 - Synpcc7942_0621 0.43 +2.2 611,227 - Synpcc7942_0621 0.43 -1.8 611,227 - Synpcc7942_0621 0.43 +1.0 611,229 - Synpcc7942_0621 0.44 +2.1 611,261 + Synpcc7942_0621 0.46 +1.4 611,306 + Synpcc7942_0621 0.50 +1.6 611,306 + Synpcc7942_0621 0.50 -1.2 611,306 + Synpcc7942_0621 0.50 -2.0 611,314 - Synpcc7942_0621 0.51 -0.2 611,314 - Synpcc7942_0621 0.51 -0.6 611,321 - Synpcc7942_0621 0.51 +1.0 611,321 - Synpcc7942_0621 0.51 -1.8 611,321 - Synpcc7942_0621 0.51 +1.0 611,325 + Synpcc7942_0621 0.52 +2.1 611,327 + Synpcc7942_0621 0.52 +1.4 611,353 + Synpcc7942_0621 0.54 +3.3 611,353 + Synpcc7942_0621 0.54 +2.6 611,354 + Synpcc7942_0621 0.54 -2.5 611,360 + Synpcc7942_0621 0.55 +3.0 611,368 + Synpcc7942_0621 0.55 -0.2 611,423 - Synpcc7942_0621 0.60 +3.9 611,437 + Synpcc7942_0621 0.61 -0.2 611,445 - Synpcc7942_0621 0.62 +1.0 611,452 - Synpcc7942_0621 0.63 +1.1 611,452 - Synpcc7942_0621 0.63 +1.8 611,473 + Synpcc7942_0621 0.64 +3.8 611,473 - Synpcc7942_0621 0.64 -0.2 611,475 + Synpcc7942_0621 0.64 +4.0 611,475 + Synpcc7942_0621 0.64 +2.9 611,475 + Synpcc7942_0621 0.64 +1.8 611,490 + -0.2 611,491 - Synpcc7942_0621 0.66 +0.8 611,511 - Synpcc7942_0621 0.68 -0.8 611,517 + Synpcc7942_0621 0.68 +5.5 611,530 - Synpcc7942_0621 0.69 +3.1 611,539 + Synpcc7942_0621 0.70 +0.2 611,546 + Synpcc7942_0621 0.70 -0.8 611,630 + Synpcc7942_0621 0.78 -0.2 611,645 + Synpcc7942_0621 0.79 +3.2 611,676 + Synpcc7942_0621 0.82 +4.0 611,676 + Synpcc7942_0621 0.82 +4.3 611,684 - Synpcc7942_0621 0.82 +2.6 611,684 - Synpcc7942_0621 0.82 +0.3 611,715 - Synpcc7942_0621 0.85 +2.4 611,757 - Synpcc7942_0621 0.88 -1.8 611,757 - Synpcc7942_0621 0.88 -0.2 611,808 + +2.4 611,862 - +2.6 611,864 + +3.7 611,872 - +3.0 611,884 - +4.5 611,886 + +7.0 611,889 + +4.2 611,894 - +4.3 611,896 - +8.0 611,915 - -1.5 611,973 + +5.0 611,992 + +3.7 612,072 + +4.8 612,268 + Synpcc7942_0622 0.18 +1.9 612,328 + Synpcc7942_0622 0.21 +2.8 612,364 + Synpcc7942_0622 0.22 +5.0 612,441 - Synpcc7942_0622 0.26 +6.4 612,458 + Synpcc7942_0622 0.27 +4.7 612,591 + Synpcc7942_0622 0.34 +1.7 612,599 - Synpcc7942_0622 0.34 +2.6 612,644 - Synpcc7942_0622 0.36 +3.5 612,653 + Synpcc7942_0622 0.37 -1.8 612,726 + Synpcc7942_0622 0.41 +0.6 612,726 + Synpcc7942_0622 0.41 -1.2 612,789 - Synpcc7942_0622 0.44 +6.2 612,801 + Synpcc7942_0622 0.44 +2.2
Or see this region's nucleotide sequence