Experiment: Spectinomycin 0.0009765625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lim17 and Synpcc7942_0398 are separated by 66 nucleotides Synpcc7942_0398 and Synpcc7942_0399 are separated by 344 nucleotides
Synpcc7942_0397: lim17 - putative neutral invertase, at 391,532 to 392,923
lim17
Synpcc7942_0398: Synpcc7942_0398 - hypothetical protein, at 392,990 to 393,448
_0398
Synpcc7942_0399: Synpcc7942_0399 - hypothetical protein, at 393,793 to 394,545
_0399
Position (kb) 392
393
394 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 391.992 kb on + strand, within lim17 at 391.999 kb on - strand, within lim17 at 391.999 kb on - strand, within lim17 at 391.999 kb on - strand, within lim17 at 392.000 kb on - strand, within lim17 at 392.002 kb on + strand, within lim17 at 392.018 kb on - strand, within lim17 at 392.045 kb on + strand, within lim17 at 392.062 kb on - strand, within lim17 at 392.068 kb on + strand, within lim17 at 392.120 kb on - strand, within lim17 at 392.128 kb on + strand, within lim17 at 392.133 kb on - strand, within lim17 at 392.143 kb on + strand, within lim17 at 392.145 kb on + strand, within lim17 at 392.145 kb on + strand, within lim17 at 392.146 kb on - strand, within lim17 at 392.146 kb on - strand, within lim17 at 392.159 kb on + strand, within lim17 at 392.161 kb on + strand, within lim17 at 392.176 kb on + strand, within lim17 at 392.176 kb on + strand, within lim17 at 392.184 kb on - strand, within lim17 at 392.186 kb on + strand, within lim17 at 392.189 kb on - strand, within lim17 at 392.192 kb on + strand, within lim17 at 392.200 kb on - strand, within lim17 at 392.207 kb on - strand, within lim17 at 392.223 kb on + strand, within lim17 at 392.240 kb on - strand, within lim17 at 392.240 kb on - strand, within lim17 at 392.305 kb on + strand, within lim17 at 392.306 kb on - strand, within lim17 at 392.306 kb on - strand, within lim17 at 392.306 kb on - strand, within lim17 at 392.313 kb on + strand, within lim17 at 392.313 kb on - strand, within lim17 at 392.314 kb on - strand, within lim17 at 392.321 kb on - strand, within lim17 at 392.366 kb on + strand, within lim17 at 392.369 kb on + strand, within lim17 at 392.386 kb on + strand, within lim17 at 392.391 kb on + strand, within lim17 at 392.423 kb on - strand, within lim17 at 392.534 kb on + strand, within lim17 at 392.536 kb on + strand, within lim17 at 392.547 kb on - strand, within lim17 at 392.602 kb on + strand, within lim17 at 392.610 kb on - strand, within lim17 at 392.610 kb on - strand, within lim17 at 392.647 kb on - strand, within lim17 at 392.663 kb on + strand, within lim17 at 392.671 kb on - strand, within lim17 at 392.671 kb on - strand, within lim17 at 392.671 kb on - strand, within lim17 at 392.736 kb on + strand at 392.736 kb on + strand, within lim17 at 392.744 kb on - strand, within lim17 at 392.746 kb on + strand, within lim17 at 392.746 kb on - strand, within lim17 at 392.755 kb on + strand, within lim17 at 392.756 kb on - strand, within lim17 at 392.766 kb on - strand, within lim17 at 392.772 kb on + strand, within lim17 at 392.777 kb on + strand, within lim17 at 392.779 kb on + strand, within lim17 at 392.780 kb on - strand, within lim17 at 392.787 kb on - strand at 392.787 kb on - strand at 392.787 kb on - strand at 392.787 kb on - strand at 392.787 kb on - strand at 392.787 kb on - strand at 392.789 kb on + strand at 392.789 kb on + strand at 392.789 kb on + strand at 392.789 kb on + strand at 392.789 kb on + strand at 392.789 kb on + strand at 392.797 kb on - strand at 392.833 kb on + strand at 392.833 kb on + strand at 392.862 kb on + strand at 392.880 kb on - strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.881 kb on + strand at 392.883 kb on + strand at 392.889 kb on - strand at 392.889 kb on - strand at 392.934 kb on + strand at 392.961 kb on - strand at 392.961 kb on - strand at 392.963 kb on + strand at 392.971 kb on - strand at 392.971 kb on - strand at 392.981 kb on + strand at 392.999 kb on + strand at 393.060 kb on + strand, within Synpcc7942_0398 at 393.171 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.194 kb on + strand, within Synpcc7942_0398 at 393.196 kb on + strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.202 kb on - strand, within Synpcc7942_0398 at 393.226 kb on - strand, within Synpcc7942_0398 at 393.280 kb on - strand, within Synpcc7942_0398 at 393.308 kb on + strand at 393.308 kb on + strand, within Synpcc7942_0398 at 393.308 kb on + strand, within Synpcc7942_0398 at 393.313 kb on + strand, within Synpcc7942_0398 at 393.313 kb on + strand, within Synpcc7942_0398 at 393.313 kb on + strand, within Synpcc7942_0398 at 393.362 kb on + strand, within Synpcc7942_0398 at 393.362 kb on + strand, within Synpcc7942_0398 at 393.362 kb on + strand, within Synpcc7942_0398 at 393.370 kb on - strand, within Synpcc7942_0398 at 393.370 kb on - strand, within Synpcc7942_0398 at 393.370 kb on - strand, within Synpcc7942_0398 at 393.380 kb on + strand, within Synpcc7942_0398 at 393.386 kb on - strand, within Synpcc7942_0398 at 393.410 kb on + strand at 393.425 kb on - strand at 393.446 kb on - strand at 393.465 kb on + strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.492 kb on - strand at 393.502 kb on - strand at 393.541 kb on - strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.591 kb on + strand at 393.592 kb on + strand at 393.592 kb on + strand at 393.592 kb on + strand at 393.603 kb on + strand at 393.604 kb on + strand at 393.604 kb on + strand at 393.606 kb on - strand at 393.611 kb on - strand at 393.612 kb on - strand at 393.635 kb on - strand at 393.679 kb on - strand at 393.700 kb on + strand at 393.700 kb on + strand at 393.705 kb on - strand at 393.706 kb on - strand at 393.746 kb on + strand at 393.757 kb on + strand at 393.757 kb on + strand at 393.757 kb on + strand at 393.765 kb on - strand at 393.765 kb on - strand at 393.767 kb on + strand at 393.767 kb on + strand at 393.791 kb on + strand at 393.794 kb on - strand at 393.872 kb on + strand, within Synpcc7942_0399 at 393.882 kb on + strand, within Synpcc7942_0399 at 393.908 kb on - strand, within Synpcc7942_0399 at 393.915 kb on + strand, within Synpcc7942_0399 at 393.933 kb on + strand, within Synpcc7942_0399 at 393.957 kb on - strand, within Synpcc7942_0399 at 393.974 kb on + strand, within Synpcc7942_0399 at 394.003 kb on - strand, within Synpcc7942_0399 at 394.005 kb on + strand, within Synpcc7942_0399 at 394.050 kb on - strand, within Synpcc7942_0399 at 394.050 kb on - strand, within Synpcc7942_0399 at 394.050 kb on - strand, within Synpcc7942_0399 at 394.050 kb on - strand, within Synpcc7942_0399 at 394.061 kb on - strand, within Synpcc7942_0399 at 394.061 kb on - strand, within Synpcc7942_0399 at 394.071 kb on - strand, within Synpcc7942_0399 at 394.103 kb on + strand, within Synpcc7942_0399 at 394.205 kb on + strand, within Synpcc7942_0399 at 394.220 kb on + strand, within Synpcc7942_0399 at 394.279 kb on + strand, within Synpcc7942_0399 at 394.307 kb on - strand, within Synpcc7942_0399 at 394.322 kb on - strand, within Synpcc7942_0399 at 394.342 kb on + strand, within Synpcc7942_0399 at 394.367 kb on + strand, within Synpcc7942_0399 at 394.431 kb on - strand, within Synpcc7942_0399
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0009765625 mg/ml remove 391,992 + lim17 Synpcc7942_0397 0.33 -1.1 391,999 - lim17 Synpcc7942_0397 0.34 -1.1 391,999 - lim17 Synpcc7942_0397 0.34 +0.9 391,999 - lim17 Synpcc7942_0397 0.34 -1.7 392,000 - lim17 Synpcc7942_0397 0.34 -2.4 392,002 + lim17 Synpcc7942_0397 0.34 -1.3 392,018 - lim17 Synpcc7942_0397 0.35 -1.4 392,045 + lim17 Synpcc7942_0397 0.37 +0.9 392,062 - lim17 Synpcc7942_0397 0.38 -1.7 392,068 + lim17 Synpcc7942_0397 0.39 +0.1 392,120 - lim17 Synpcc7942_0397 0.42 -2.7 392,128 + lim17 Synpcc7942_0397 0.43 -2.1 392,133 - lim17 Synpcc7942_0397 0.43 -1.3 392,143 + lim17 Synpcc7942_0397 0.44 -0.1 392,145 + lim17 Synpcc7942_0397 0.44 -1.1 392,145 + lim17 Synpcc7942_0397 0.44 -0.1 392,146 - lim17 Synpcc7942_0397 0.44 +0.5 392,146 - lim17 Synpcc7942_0397 0.44 +0.7 392,159 + lim17 Synpcc7942_0397 0.45 -1.4 392,161 + lim17 Synpcc7942_0397 0.45 -1.3 392,176 + lim17 Synpcc7942_0397 0.46 -0.1 392,176 + lim17 Synpcc7942_0397 0.46 -2.4 392,184 - lim17 Synpcc7942_0397 0.47 +0.4 392,186 + lim17 Synpcc7942_0397 0.47 -1.1 392,189 - lim17 Synpcc7942_0397 0.47 -0.7 392,192 + lim17 Synpcc7942_0397 0.47 -2.3 392,200 - lim17 Synpcc7942_0397 0.48 -1.1 392,207 - lim17 Synpcc7942_0397 0.48 +0.7 392,223 + lim17 Synpcc7942_0397 0.50 -1.1 392,240 - lim17 Synpcc7942_0397 0.51 -1.1 392,240 - lim17 Synpcc7942_0397 0.51 -1.7 392,305 + lim17 Synpcc7942_0397 0.56 -0.1 392,306 - lim17 Synpcc7942_0397 0.56 -2.4 392,306 - lim17 Synpcc7942_0397 0.56 -1.0 392,306 - lim17 Synpcc7942_0397 0.56 -0.1 392,313 + lim17 Synpcc7942_0397 0.56 +0.5 392,313 - lim17 Synpcc7942_0397 0.56 -0.1 392,314 - lim17 Synpcc7942_0397 0.56 -0.9 392,321 - lim17 Synpcc7942_0397 0.57 -1.7 392,366 + lim17 Synpcc7942_0397 0.60 -1.1 392,369 + lim17 Synpcc7942_0397 0.60 -2.1 392,386 + lim17 Synpcc7942_0397 0.61 -2.7 392,391 + lim17 Synpcc7942_0397 0.62 -2.1 392,423 - lim17 Synpcc7942_0397 0.64 -0.1 392,534 + lim17 Synpcc7942_0397 0.72 +0.9 392,536 + lim17 Synpcc7942_0397 0.72 -1.7 392,547 - lim17 Synpcc7942_0397 0.73 -1.9 392,602 + lim17 Synpcc7942_0397 0.77 -0.1 392,610 - lim17 Synpcc7942_0397 0.77 -0.1 392,610 - lim17 Synpcc7942_0397 0.77 -0.1 392,647 - lim17 Synpcc7942_0397 0.80 -1.0 392,663 + lim17 Synpcc7942_0397 0.81 -3.0 392,671 - lim17 Synpcc7942_0397 0.82 -1.1 392,671 - lim17 Synpcc7942_0397 0.82 -2.7 392,671 - lim17 Synpcc7942_0397 0.82 +0.5 392,736 + +0.9 392,736 + lim17 Synpcc7942_0397 0.86 -0.1 392,744 - lim17 Synpcc7942_0397 0.87 -0.1 392,746 + lim17 Synpcc7942_0397 0.87 -0.7 392,746 - lim17 Synpcc7942_0397 0.87 -1.9 392,755 + lim17 Synpcc7942_0397 0.88 -1.7 392,756 - lim17 Synpcc7942_0397 0.88 -1.8 392,766 - lim17 Synpcc7942_0397 0.89 -2.1 392,772 + lim17 Synpcc7942_0397 0.89 -2.6 392,777 + lim17 Synpcc7942_0397 0.89 +0.9 392,779 + lim17 Synpcc7942_0397 0.90 +1.1 392,780 - lim17 Synpcc7942_0397 0.90 -2.7 392,787 - -1.7 392,787 - -1.7 392,787 - -1.1 392,787 - -2.1 392,787 - -0.1 392,787 - -0.5 392,789 + -0.1 392,789 + +0.1 392,789 + -1.4 392,789 + -1.7 392,789 + -1.7 392,789 + -0.9 392,797 - -1.1 392,833 + -2.9 392,833 + -1.4 392,862 + -0.4 392,880 - -2.8 392,881 + -1.5 392,881 + -2.1 392,881 + +1.5 392,881 + +1.5 392,881 + -2.1 392,881 + +0.6 392,881 + +0.5 392,883 + -0.4 392,889 - +1.5 392,889 - +0.3 392,934 + -0.1 392,961 - -0.1 392,961 - -0.9 392,963 + +0.9 392,971 - -0.1 392,971 - +0.4 392,981 + -1.1 392,999 + +1.9 393,060 + Synpcc7942_0398 0.15 -0.1 393,171 + Synpcc7942_0398 0.39 -0.6 393,194 + Synpcc7942_0398 0.44 +0.9 393,194 + Synpcc7942_0398 0.44 -1.1 393,194 + Synpcc7942_0398 0.44 +1.0 393,194 + Synpcc7942_0398 0.44 -1.7 393,194 + Synpcc7942_0398 0.44 -1.7 393,194 + Synpcc7942_0398 0.44 -1.7 393,194 + Synpcc7942_0398 0.44 -0.9 393,196 + Synpcc7942_0398 0.45 -1.1 393,202 - Synpcc7942_0398 0.46 -0.5 393,202 - Synpcc7942_0398 0.46 -2.1 393,202 - Synpcc7942_0398 0.46 -0.1 393,202 - Synpcc7942_0398 0.46 +0.9 393,202 - Synpcc7942_0398 0.46 -0.1 393,202 - Synpcc7942_0398 0.46 -0.1 393,226 - Synpcc7942_0398 0.51 -2.1 393,280 - Synpcc7942_0398 0.63 -1.5 393,308 + -0.1 393,308 + Synpcc7942_0398 0.69 -1.7 393,308 + Synpcc7942_0398 0.69 +0.9 393,313 + Synpcc7942_0398 0.70 -0.7 393,313 + Synpcc7942_0398 0.70 -1.1 393,313 + Synpcc7942_0398 0.70 -2.1 393,362 + Synpcc7942_0398 0.81 -0.1 393,362 + Synpcc7942_0398 0.81 -0.7 393,362 + Synpcc7942_0398 0.81 -1.6 393,370 - Synpcc7942_0398 0.83 +4.7 393,370 - Synpcc7942_0398 0.83 -0.5 393,370 - Synpcc7942_0398 0.83 -1.1 393,380 + Synpcc7942_0398 0.85 -2.5 393,386 - Synpcc7942_0398 0.86 -1.7 393,410 + -0.1 393,425 - -1.1 393,446 - +0.0 393,465 + -0.7 393,492 - +0.5 393,492 - +0.6 393,492 - -0.7 393,492 - -0.7 393,502 - +0.9 393,541 - -1.1 393,591 + -1.1 393,591 + +0.5 393,591 + -0.1 393,591 + -2.5 393,591 + +2.9 393,592 + +1.5 393,592 + -0.4 393,592 + -0.5 393,603 + -0.1 393,604 + +1.5 393,604 + -0.1 393,606 - +0.5 393,611 - +1.9 393,612 - +0.9 393,635 - -1.4 393,679 - -1.1 393,700 + -0.9 393,700 + -1.1 393,705 - +0.6 393,706 - -0.6 393,746 + -1.1 393,757 + -1.7 393,757 + -0.7 393,757 + +0.9 393,765 - -0.1 393,765 - -1.7 393,767 + -0.1 393,767 + +0.6 393,791 + -1.1 393,794 - -1.5 393,872 + Synpcc7942_0399 0.10 -0.1 393,882 + Synpcc7942_0399 0.12 -0.1 393,908 - Synpcc7942_0399 0.15 -1.4 393,915 + Synpcc7942_0399 0.16 -1.3 393,933 + Synpcc7942_0399 0.19 -3.8 393,957 - Synpcc7942_0399 0.22 -1.1 393,974 + Synpcc7942_0399 0.24 -0.1 394,003 - Synpcc7942_0399 0.28 +0.4 394,005 + Synpcc7942_0399 0.28 -1.1 394,050 - Synpcc7942_0399 0.34 +1.4 394,050 - Synpcc7942_0399 0.34 -2.1 394,050 - Synpcc7942_0399 0.34 -0.7 394,050 - Synpcc7942_0399 0.34 -2.1 394,061 - Synpcc7942_0399 0.36 -1.9 394,061 - Synpcc7942_0399 0.36 -1.1 394,071 - Synpcc7942_0399 0.37 -0.6 394,103 + Synpcc7942_0399 0.41 -3.5 394,205 + Synpcc7942_0399 0.55 -1.1 394,220 + Synpcc7942_0399 0.57 -1.1 394,279 + Synpcc7942_0399 0.65 -1.7 394,307 - Synpcc7942_0399 0.68 -0.5 394,322 - Synpcc7942_0399 0.70 +0.6 394,342 + Synpcc7942_0399 0.73 +0.3 394,367 + Synpcc7942_0399 0.76 -0.1 394,431 - Synpcc7942_0399 0.85 -0.1
Or see this region's nucleotide sequence