Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0089

Experiment: Spectinomycin 0.0009765625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0009765625 mg/ml
86,883	+		Synpcc7942_0088	0.46	-0.1
86,891	-		Synpcc7942_0088	0.48	-0.1
86,916	-		Synpcc7942_0088	0.51	+0.5
86,916	-		Synpcc7942_0088	0.51	-1.7
86,966	-		Synpcc7942_0088	0.58	-1.7
86,977	+		Synpcc7942_0088	0.59	-1.7
86,987	+		Synpcc7942_0088	0.61	-1.9
86,987	+		Synpcc7942_0088	0.61	+0.9
86,989	+		Synpcc7942_0088	0.61	-0.8
86,995	-		Synpcc7942_0088	0.62	+0.9
86,997	-		Synpcc7942_0088	0.62	-0.1
87,014	+		Synpcc7942_0088	0.65	-0.7
87,019	-		Synpcc7942_0088	0.65	-0.9
87,022	-		Synpcc7942_0088	0.66	+0.9
87,022	-		Synpcc7942_0088	0.66	+0.6
87,022	-		Synpcc7942_0088	0.66	-0.7
87,068	-		Synpcc7942_0088	0.72	-0.1
87,070	-		Synpcc7942_0088	0.72	-2.1
87,072	+		Synpcc7942_0088	0.73	+0.6
87,078	+		Synpcc7942_0088	0.73	-1.7
87,078	+		Synpcc7942_0088	0.73	+0.9
87,078	+		Synpcc7942_0088	0.73	-1.7
87,080	-		Synpcc7942_0088	0.74	+0.9
87,080	-				-0.5
87,116	+		Synpcc7942_0088	0.79	+1.5
87,134	-		Synpcc7942_0088	0.81	+1.5
87,134	-		Synpcc7942_0088	0.81	-1.1
87,152	+		Synpcc7942_0088	0.84	-0.5
87,157	+		Synpcc7942_0088	0.84	-1.3
87,162	+		Synpcc7942_0088	0.85	-0.1
87,162	+		Synpcc7942_0088	0.85	-0.1
87,187	+		Synpcc7942_0088	0.89	-0.1
87,187	+		Synpcc7942_0088	0.89	-0.1
87,238	-				+1.1
87,238	-				+0.8
87,240	+				-1.1
87,294	+				+0.9
87,309	+				-0.1
87,345	+				-0.1
87,355	+				-1.1
87,355	+				-0.5
87,363	-				-1.7
87,370	+				-0.1
87,378	-				+0.3
87,467	-				+0.3
87,492	+				-0.7
87,499	-				-0.1
87,560	-				-1.3
87,578	+				-0.5
87,597	-				+1.2
87,616	+				+0.0
87,639	+				-1.0
87,669	+				+0.5
87,682	+				-0.1
87,683	+				+1.9
87,839	-				+0.1
87,866	+				+2.3
87,878	+				-1.1
87,878	+				+0.2
87,878	+				+0.4
87,878	+				-0.3
87,878	+				+1.1
87,878	+				+0.9
87,878	+				-1.7
87,878	+				-1.7
87,878	+				+0.5
87,878	+				-0.4
87,878	+				-0.1
87,878	+				-0.6
87,878	+				-0.7
87,878	+				+1.8
87,878	+				-2.1
87,878	+				+0.2
87,886	-				-0.5
87,886	-				-3.3
87,886	-				-0.7
87,886	-				+0.6
87,886	-				-1.0
87,886	-				+1.9
87,886	-				-2.7
87,886	-				-1.1
87,886	-				+0.5
87,886	-				+0.9
87,886	-				-0.7
87,886	-				-0.5
87,886	-				+1.2
87,886	-				-1.7
87,886	-				+2.0
87,886	-				-0.1
87,893	+				+2.2
87,901	-				-0.1
87,947	+				-0.1
88,019	+				-1.7
88,029	+	clcD	Synpcc7942_0089	0.20	-0.1
88,037	-	clcD	Synpcc7942_0089	0.21	+0.5
88,048	+	clcD	Synpcc7942_0089	0.23	+2.2
88,056	+	clcD	Synpcc7942_0089	0.24	+1.3
88,064	-	clcD	Synpcc7942_0089	0.25	+0.9
88,085	+	clcD	Synpcc7942_0089	0.28	+0.3
88,085	+	clcD	Synpcc7942_0089	0.28	+1.5
88,085	+	clcD	Synpcc7942_0089	0.28	+2.1
88,085	+	clcD	Synpcc7942_0089	0.28	-0.7
88,093	-	clcD	Synpcc7942_0089	0.29	-0.1
88,093	-	clcD	Synpcc7942_0089	0.29	+0.9
88,093	-	clcD	Synpcc7942_0089	0.29	-1.1
88,093	-	clcD	Synpcc7942_0089	0.29	-0.1
88,093	-	clcD	Synpcc7942_0089	0.29	+1.9
88,144	+	clcD	Synpcc7942_0089	0.36	-0.1
88,175	-	clcD	Synpcc7942_0089	0.40	-0.1
88,184	+	clcD	Synpcc7942_0089	0.41	+0.7
88,186	+	clcD	Synpcc7942_0089	0.41	+1.8
88,192	-	clcD	Synpcc7942_0089	0.42	-1.4
88,192	-	clcD	Synpcc7942_0089	0.42	+1.8
88,197	+	clcD	Synpcc7942_0089	0.43	+3.3
88,201	+	clcD	Synpcc7942_0089	0.44	+1.9
88,217	+	clcD	Synpcc7942_0089	0.46	-0.1
88,263	+	clcD	Synpcc7942_0089	0.52	+2.2
88,265	-	clcD	Synpcc7942_0089	0.52	-0.6
88,265	-	clcD	Synpcc7942_0089	0.52	+0.9
88,271	-	clcD	Synpcc7942_0089	0.53	-0.1
88,280	+	clcD	Synpcc7942_0089	0.54	+0.8
88,300	-	clcD	Synpcc7942_0089	0.57	+0.9
88,300	-	clcD	Synpcc7942_0089	0.57	+0.9
88,311	+	clcD	Synpcc7942_0089	0.59	+3.8
88,311	+	clcD	Synpcc7942_0089	0.59	+0.5
88,312	-	clcD	Synpcc7942_0089	0.59	+1.5
88,367	+	clcD	Synpcc7942_0089	0.66	+0.6
88,390	-	clcD	Synpcc7942_0089	0.69	-1.3
88,395	-	clcD	Synpcc7942_0089	0.70	+2.0
88,409	+	clcD	Synpcc7942_0089	0.72	-0.1
88,439	+	clcD	Synpcc7942_0089	0.76	-0.7
88,440	-	clcD	Synpcc7942_0089	0.76	+0.9
88,451	-	clcD	Synpcc7942_0089	0.78	+0.3
88,520	+	clcD	Synpcc7942_0089	0.87	-0.7
88,521	-	clcD	Synpcc7942_0089	0.87	+0.9
88,528	-	clcD	Synpcc7942_0089	0.88	-1.4
88,581	+				-0.1
88,581	+				+1.5
88,581	+				+0.5
88,591	+				+1.1
88,635	-				-0.1
88,637	+				+1.6
88,645	-				-0.4
88,647	-				+1.5
88,657	-				-0.1
88,667	+				+0.9
88,670	-				-0.7
88,672	+				-1.1
88,675	-				-1.1
88,684	+				+0.1