Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04308 and SMc04309 are separated by 92 nucleotides SMc04309 and SMc04310 are separated by 244 nucleotides SMc04310 and SMc04311 are separated by 463 nucleotides
SMc04308: SMc04308 - oxidoreductase, at 2,126,366 to 2,127,181
SMc04308
SMc04309: SMc04309 - cobyric acid synthase, at 2,127,274 to 2,128,728
SMc04309
SMc04310: SMc04310 - hypothetical protein, at 2,128,973 to 2,129,116
SMc04310
SMc04311: SMc04311 - hypothetical protein, at 2,129,580 to 2,130,578
SMc04311
Position (kb)
2127
2128
2129 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2126.298 kb on + strand at 2126.360 kb on + strand at 2126.360 kb on + strand at 2126.360 kb on + strand at 2126.361 kb on - strand at 2126.361 kb on - strand at 2126.361 kb on - strand at 2126.361 kb on - strand at 2126.361 kb on - strand at 2126.522 kb on + strand, within SMc04308 at 2126.522 kb on + strand, within SMc04308 at 2126.522 kb on + strand, within SMc04308 at 2126.523 kb on - strand, within SMc04308 at 2126.561 kb on + strand, within SMc04308 at 2126.606 kb on - strand, within SMc04308 at 2126.673 kb on + strand, within SMc04308 at 2126.674 kb on - strand, within SMc04308 at 2126.674 kb on - strand, within SMc04308 at 2126.904 kb on + strand, within SMc04308 at 2126.910 kb on + strand, within SMc04308 at 2126.910 kb on + strand, within SMc04308 at 2127.001 kb on - strand, within SMc04308 at 2127.072 kb on + strand, within SMc04308 at 2127.072 kb on + strand, within SMc04308 at 2127.072 kb on + strand, within SMc04308 at 2127.072 kb on + strand, within SMc04308 at 2127.102 kb on + strand at 2127.102 kb on + strand at 2127.103 kb on - strand at 2127.103 kb on - strand at 2127.103 kb on - strand at 2127.103 kb on - strand at 2127.171 kb on + strand at 2127.171 kb on + strand at 2127.171 kb on + strand at 2128.915 kb on + strand at 2128.917 kb on + strand at 2128.965 kb on - strand at 2129.114 kb on + strand at 2129.232 kb on - strand at 2129.232 kb on - strand at 2129.262 kb on + strand at 2129.263 kb on - strand at 2129.307 kb on + strand at 2129.307 kb on + strand at 2129.307 kb on + strand at 2129.322 kb on - strand at 2129.387 kb on + strand at 2129.412 kb on - strand at 2129.466 kb on + strand at 2129.597 kb on + strand at 2129.620 kb on + strand at 2129.620 kb on + strand at 2129.620 kb on + strand at 2129.620 kb on + strand at 2129.620 kb on + strand at 2129.620 kb on + strand at 2129.620 kb on + strand at 2129.620 kb on + strand at 2129.620 kb on + strand at 2129.621 kb on - strand at 2129.621 kb on - strand at 2129.621 kb on - strand at 2129.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 2,126,298 + -0.2 2,126,360 + +0.4 2,126,360 + +0.2 2,126,360 + -0.9 2,126,361 - -1.3 2,126,361 - +1.4 2,126,361 - -1.1 2,126,361 - -0.3 2,126,361 - +0.0 2,126,522 + SMc04308 0.19 -3.4 2,126,522 + SMc04308 0.19 +0.3 2,126,522 + SMc04308 0.19 +0.2 2,126,523 - SMc04308 0.19 -2.5 2,126,561 + SMc04308 0.24 +0.1 2,126,606 - SMc04308 0.29 +0.4 2,126,673 + SMc04308 0.38 +1.1 2,126,674 - SMc04308 0.38 -1.8 2,126,674 - SMc04308 0.38 +0.2 2,126,904 + SMc04308 0.66 -0.2 2,126,910 + SMc04308 0.67 -0.9 2,126,910 + SMc04308 0.67 -0.0 2,127,001 - SMc04308 0.78 -1.4 2,127,072 + SMc04308 0.87 -1.3 2,127,072 + SMc04308 0.87 +3.6 2,127,072 + SMc04308 0.87 -0.8 2,127,072 + SMc04308 0.87 +1.2 2,127,102 + +0.5 2,127,102 + -0.2 2,127,103 - +0.5 2,127,103 - +0.0 2,127,103 - -0.2 2,127,103 - -2.0 2,127,171 + -0.1 2,127,171 + +0.8 2,127,171 + +0.3 2,128,915 + +1.2 2,128,917 + -0.2 2,128,965 - +2.2 2,129,114 + -0.7 2,129,232 - -0.7 2,129,232 - +0.5 2,129,262 + +0.3 2,129,263 - -1.8 2,129,307 + +1.2 2,129,307 + -2.5 2,129,307 + -0.0 2,129,322 - +1.8 2,129,387 + +0.4 2,129,412 - -0.6 2,129,466 + -0.3 2,129,597 + +0.1 2,129,620 + +1.2 2,129,620 + +1.1 2,129,620 + -0.3 2,129,620 + -3.2 2,129,620 + -3.0 2,129,620 + -0.1 2,129,620 + -0.6 2,129,620 + -0.3 2,129,620 + -2.1 2,129,621 - -0.1 2,129,621 - -0.6 2,129,621 - +0.2 2,129,621 - -2.0
Or see this region's nucleotide sequence