Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04245 and SMc04246 are separated by 393 nucleotides SMc04246 and SMc04247 are separated by 128 nucleotides
SMc04245: SMc04245 - high-affinity zinc uptake system ABC transporter protein, at 2,069,425 to 2,070,447
SMc04245
SMc04246: SMc04246 - transmembrane signal peptide protein, at 2,070,841 to 2,071,221
SMc04246
SMc04247: SMc04247 - beta-xylosidase, at 2,071,350 to 2,072,975
SMc04247
Position (kb)
2070
2071
2072 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2069.940 kb on + strand, within SMc04245 at 2069.940 kb on + strand, within SMc04245 at 2069.940 kb on + strand, within SMc04245 at 2069.940 kb on + strand, within SMc04245 at 2069.940 kb on + strand, within SMc04245 at 2069.940 kb on + strand, within SMc04245 at 2069.940 kb on + strand, within SMc04245 at 2069.940 kb on + strand, within SMc04245 at 2069.940 kb on + strand, within SMc04245 at 2069.940 kb on + strand, within SMc04245 at 2069.940 kb on + strand, within SMc04245 at 2069.941 kb on - strand, within SMc04245 at 2069.941 kb on - strand, within SMc04245 at 2069.941 kb on - strand, within SMc04245 at 2069.941 kb on - strand, within SMc04245 at 2069.941 kb on - strand, within SMc04245 at 2069.941 kb on - strand, within SMc04245 at 2070.029 kb on - strand, within SMc04245 at 2070.029 kb on - strand, within SMc04245 at 2070.139 kb on + strand, within SMc04245 at 2070.140 kb on - strand, within SMc04245 at 2070.145 kb on + strand, within SMc04245 at 2070.145 kb on + strand, within SMc04245 at 2070.146 kb on - strand, within SMc04245 at 2070.314 kb on + strand, within SMc04245 at 2070.446 kb on - strand at 2070.454 kb on - strand at 2070.529 kb on + strand at 2070.530 kb on - strand at 2070.661 kb on + strand at 2070.662 kb on - strand at 2070.662 kb on - strand at 2070.662 kb on - strand at 2070.742 kb on - strand at 2070.742 kb on - strand at 2070.742 kb on - strand at 2070.745 kb on + strand at 2070.745 kb on + strand at 2070.846 kb on - strand at 2070.951 kb on - strand, within SMc04246 at 2070.971 kb on + strand, within SMc04246 at 2070.972 kb on - strand, within SMc04246 at 2071.255 kb on - strand at 2071.298 kb on + strand at 2071.319 kb on + strand at 2071.627 kb on + strand, within SMc04247 at 2071.668 kb on + strand, within SMc04247 at 2071.668 kb on + strand, within SMc04247 at 2071.668 kb on + strand, within SMc04247 at 2071.668 kb on + strand, within SMc04247 at 2071.669 kb on - strand, within SMc04247 at 2071.669 kb on - strand, within SMc04247 at 2071.669 kb on - strand, within SMc04247 at 2071.669 kb on - strand, within SMc04247 at 2071.674 kb on + strand, within SMc04247 at 2071.733 kb on + strand, within SMc04247 at 2071.735 kb on + strand, within SMc04247 at 2071.735 kb on + strand, within SMc04247 at 2071.736 kb on - strand, within SMc04247 at 2071.736 kb on - strand, within SMc04247 at 2071.736 kb on - strand, within SMc04247 at 2071.736 kb on - strand, within SMc04247 at 2071.738 kb on + strand at 2071.738 kb on + strand, within SMc04247 at 2071.739 kb on - strand, within SMc04247 at 2071.739 kb on - strand, within SMc04247 at 2071.766 kb on - strand, within SMc04247 at 2072.065 kb on + strand, within SMc04247 at 2072.165 kb on + strand, within SMc04247 at 2072.165 kb on + strand, within SMc04247 at 2072.165 kb on + strand, within SMc04247 at 2072.166 kb on - strand, within SMc04247 at 2072.166 kb on - strand, within SMc04247 at 2072.166 kb on - strand, within SMc04247 at 2072.166 kb on - strand, within SMc04247 at 2072.166 kb on - strand, within SMc04247 at 2072.166 kb on - strand, within SMc04247 at 2072.170 kb on + strand, within SMc04247 at 2072.170 kb on + strand, within SMc04247 at 2072.197 kb on + strand, within SMc04247 at 2072.198 kb on - strand, within SMc04247 at 2072.198 kb on - strand, within SMc04247
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 2,069,940 + SMc04245 0.50 +1.4 2,069,940 + SMc04245 0.50 -2.5 2,069,940 + SMc04245 0.50 +1.1 2,069,940 + SMc04245 0.50 +1.4 2,069,940 + SMc04245 0.50 -1.2 2,069,940 + SMc04245 0.50 -1.0 2,069,940 + SMc04245 0.50 +0.4 2,069,940 + SMc04245 0.50 -4.1 2,069,940 + SMc04245 0.50 +0.8 2,069,940 + SMc04245 0.50 -3.4 2,069,940 + SMc04245 0.50 +0.8 2,069,941 - SMc04245 0.50 -0.2 2,069,941 - SMc04245 0.50 -1.1 2,069,941 - SMc04245 0.50 -2.6 2,069,941 - SMc04245 0.50 -1.8 2,069,941 - SMc04245 0.50 -3.1 2,069,941 - SMc04245 0.50 -0.1 2,070,029 - SMc04245 0.59 -3.1 2,070,029 - SMc04245 0.59 -2.0 2,070,139 + SMc04245 0.70 +1.2 2,070,140 - SMc04245 0.70 -0.8 2,070,145 + SMc04245 0.70 -2.2 2,070,145 + SMc04245 0.70 -1.2 2,070,146 - SMc04245 0.70 -0.6 2,070,314 + SMc04245 0.87 -1.6 2,070,446 - +0.4 2,070,454 - +0.3 2,070,529 + -2.8 2,070,530 - -0.2 2,070,661 + +0.2 2,070,662 - -0.4 2,070,662 - +2.1 2,070,662 - +0.4 2,070,742 - -1.1 2,070,742 - +0.5 2,070,742 - +1.1 2,070,745 + -1.5 2,070,745 + -0.4 2,070,846 - -0.5 2,070,951 - SMc04246 0.29 +0.6 2,070,971 + SMc04246 0.34 +1.8 2,070,972 - SMc04246 0.34 +1.8 2,071,255 - -2.0 2,071,298 + +0.1 2,071,319 + +0.1 2,071,627 + SMc04247 0.17 +0.8 2,071,668 + SMc04247 0.20 -0.2 2,071,668 + SMc04247 0.20 -2.9 2,071,668 + SMc04247 0.20 -1.4 2,071,668 + SMc04247 0.20 +0.4 2,071,669 - SMc04247 0.20 +0.6 2,071,669 - SMc04247 0.20 -3.3 2,071,669 - SMc04247 0.20 +0.2 2,071,669 - SMc04247 0.20 -0.0 2,071,674 + SMc04247 0.20 -0.9 2,071,733 + SMc04247 0.24 -1.7 2,071,735 + SMc04247 0.24 +0.2 2,071,735 + SMc04247 0.24 -2.8 2,071,736 - SMc04247 0.24 +0.1 2,071,736 - SMc04247 0.24 -2.0 2,071,736 - SMc04247 0.24 +1.8 2,071,736 - SMc04247 0.24 +0.7 2,071,738 + +0.8 2,071,738 + SMc04247 0.24 -0.7 2,071,739 - SMc04247 0.24 -0.1 2,071,739 - SMc04247 0.24 -2.0 2,071,766 - SMc04247 0.26 +0.0 2,072,065 + SMc04247 0.44 -0.2 2,072,165 + SMc04247 0.50 -1.1 2,072,165 + SMc04247 0.50 -0.6 2,072,165 + SMc04247 0.50 +0.1 2,072,166 - SMc04247 0.50 +1.0 2,072,166 - SMc04247 0.50 +0.7 2,072,166 - SMc04247 0.50 +0.2 2,072,166 - SMc04247 0.50 +0.4 2,072,166 - SMc04247 0.50 -3.1 2,072,166 - SMc04247 0.50 -2.8 2,072,170 + SMc04247 0.50 -0.9 2,072,170 + SMc04247 0.50 +0.4 2,072,197 + SMc04247 0.52 +0.6 2,072,198 - SMc04247 0.52 +1.9 2,072,198 - SMc04247 0.52 +0.9
Or see this region's nucleotide sequence