Strain Fitness in Sinorhizobium meliloti 1021 around SMc03926

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03925 and SMc03926 are separated by 229 nucleotidesSMc03926 and SMc03927 are separated by 152 nucleotidesSMc03927 and SMc03928 overlap by 8 nucleotides SMc03925: SMc03925 - phosphoglucomutase, at 3,072,749 to 3,074,377 SMc03925 SMc03926: SMc03926 - glycosyl hydrolase, at 3,074,607 to 3,076,595 SMc03926 SMc03927: SMc03927 - nodulation protein, at 3,076,748 to 3,077,236 SMc03927 SMc03928: SMc03928 - hypothetical protein, at 3,077,229 to 3,078,305 SMc03928 Position (kb) 3074 3075 3076 3077Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3074.516 kb on - strandat 3074.516 kb on - strandat 3074.560 kb on - strandat 3074.667 kb on - strandat 3074.667 kb on - strandat 3074.791 kb on + strandat 3074.792 kb on - strandat 3074.792 kb on - strandat 3074.792 kb on - strandat 3074.792 kb on - strandat 3074.792 kb on - strandat 3074.792 kb on - strandat 3074.833 kb on - strand, within SMc03926at 3074.886 kb on + strand, within SMc03926at 3074.887 kb on - strand, within SMc03926at 3075.037 kb on - strand, within SMc03926at 3075.238 kb on - strand, within SMc03926at 3075.238 kb on - strand, within SMc03926at 3075.426 kb on + strand, within SMc03926at 3075.427 kb on - strand, within SMc03926at 3075.427 kb on - strand, within SMc03926at 3075.429 kb on + strand, within SMc03926at 3075.429 kb on + strand, within SMc03926at 3075.998 kb on + strand, within SMc03926at 3076.089 kb on - strand, within SMc03926at 3076.089 kb on - strand, within SMc03926at 3076.161 kb on + strand, within SMc03926at 3076.161 kb on + strand, within SMc03926at 3076.161 kb on + strand, within SMc03926at 3076.625 kb on + strandat 3076.626 kb on - strandat 3076.711 kb on + strandat 3076.713 kb on + strandat 3076.713 kb on + strandat 3076.713 kb on + strandat 3076.713 kb on + strandat 3076.714 kb on - strandat 3077.261 kb on - strandat 3077.494 kb on - strand, within SMc03928

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,074,516 - +1.3
3,074,516 - -0.9
3,074,560 - -0.4
3,074,667 - +0.1
3,074,667 - -1.6
3,074,791 + -0.2
3,074,792 - -1.8
3,074,792 - +0.0
3,074,792 - +1.1
3,074,792 - -2.8
3,074,792 - +2.0
3,074,792 - -1.7
3,074,833 - SMc03926 0.11 -2.5
3,074,886 + SMc03926 0.14 -1.3
3,074,887 - SMc03926 0.14 -4.3
3,075,037 - SMc03926 0.22 -0.9
3,075,238 - SMc03926 0.32 +0.9
3,075,238 - SMc03926 0.32 -0.9
3,075,426 + SMc03926 0.41 -1.4
3,075,427 - SMc03926 0.41 -0.7
3,075,427 - SMc03926 0.41 -0.8
3,075,429 + SMc03926 0.41 -0.1
3,075,429 + SMc03926 0.41 -0.5
3,075,998 + SMc03926 0.70 -3.0
3,076,089 - SMc03926 0.75 -1.2
3,076,089 - SMc03926 0.75 -5.4
3,076,161 + SMc03926 0.78 +0.7
3,076,161 + SMc03926 0.78 -3.3
3,076,161 + SMc03926 0.78 -3.5
3,076,625 + -2.3
3,076,626 - -1.0
3,076,711 + +1.2
3,076,713 + +1.4
3,076,713 + -0.1
3,076,713 + -1.0
3,076,713 + -0.3
3,076,714 - -1.7
3,077,261 - -1.1
3,077,494 - SMc03928 0.25 -0.5

Or see this region's nucleotide sequence