Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03783 and SMc03784 are separated by 181 nucleotides SMc03784 and SMc03785 are separated by 84 nucleotides SMc03785 and SMc03786 are separated by 215 nucleotides
SMc03783: SMc03783 - carboxy-terminal processing protease precursor signal peptide protein, at 3,447,956 to 3,449,278
SMc03783
SMc03784: SMc03784 - hypothetical protein, at 3,449,460 to 3,450,662
SMc03784
SMc03785: SMc03785 - dinucleoside polyphosphate hydrolase, at 3,450,747 to 3,451,250
SMc03785
SMc03786: SMc03786 - bacterioferritin, at 3,451,466 to 3,451,951
SMc03786
Position (kb)
3449
3450
3451 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3449.348 kb on + strand at 3449.348 kb on + strand at 3449.350 kb on + strand at 3449.351 kb on - strand at 3449.353 kb on + strand at 3449.354 kb on - strand at 3449.354 kb on - strand at 3449.788 kb on - strand, within SMc03784 at 3449.955 kb on + strand, within SMc03784 at 3449.955 kb on + strand, within SMc03784 at 3449.956 kb on - strand, within SMc03784 at 3449.956 kb on - strand, within SMc03784 at 3450.273 kb on + strand, within SMc03784 at 3450.273 kb on + strand, within SMc03784 at 3450.274 kb on - strand, within SMc03784 at 3450.274 kb on - strand, within SMc03784 at 3450.274 kb on - strand, within SMc03784 at 3450.675 kb on - strand at 3450.735 kb on - strand at 3450.853 kb on - strand, within SMc03785 at 3450.939 kb on + strand, within SMc03785 at 3450.999 kb on + strand, within SMc03785 at 3451.045 kb on - strand, within SMc03785 at 3451.209 kb on + strand at 3451.436 kb on + strand at 3451.436 kb on + strand at 3451.467 kb on + strand at 3451.468 kb on - strand at 3451.559 kb on + strand, within SMc03786 at 3451.560 kb on - strand, within SMc03786 at 3451.611 kb on + strand, within SMc03786 at 3451.648 kb on + strand, within SMc03786
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 3,449,348 + +2.1 3,449,348 + +1.1 3,449,350 + -0.5 3,449,351 - -2.7 3,449,353 + +0.9 3,449,354 - +0.1 3,449,354 - -2.7 3,449,788 - SMc03784 0.27 -1.7 3,449,955 + SMc03784 0.41 -2.4 3,449,955 + SMc03784 0.41 -4.2 3,449,956 - SMc03784 0.41 +0.1 3,449,956 - SMc03784 0.41 -0.5 3,450,273 + SMc03784 0.68 -0.0 3,450,273 + SMc03784 0.68 +0.3 3,450,274 - SMc03784 0.68 +0.1 3,450,274 - SMc03784 0.68 +0.6 3,450,274 - SMc03784 0.68 +1.2 3,450,675 - -2.2 3,450,735 - -1.2 3,450,853 - SMc03785 0.21 -2.4 3,450,939 + SMc03785 0.38 +0.3 3,450,999 + SMc03785 0.50 -1.0 3,451,045 - SMc03785 0.59 -2.0 3,451,209 + -0.6 3,451,436 + +0.5 3,451,436 + +0.5 3,451,467 + -1.1 3,451,468 - -0.8 3,451,559 + SMc03786 0.19 -0.2 3,451,560 - SMc03786 0.19 +0.5 3,451,611 + SMc03786 0.30 +0.5 3,451,648 + SMc03786 0.37 -0.5
Or see this region's nucleotide sequence