Strain Fitness in Sinorhizobium meliloti 1021 around SMc03784

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03783 and SMc03784 are separated by 181 nucleotidesSMc03784 and SMc03785 are separated by 84 nucleotidesSMc03785 and SMc03786 are separated by 215 nucleotides SMc03783: SMc03783 - carboxy-terminal processing protease precursor signal peptide protein, at 3,447,956 to 3,449,278 SMc03783 SMc03784: SMc03784 - hypothetical protein, at 3,449,460 to 3,450,662 SMc03784 SMc03785: SMc03785 - dinucleoside polyphosphate hydrolase, at 3,450,747 to 3,451,250 SMc03785 SMc03786: SMc03786 - bacterioferritin, at 3,451,466 to 3,451,951 SMc03786 Position (kb) 3449 3450 3451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3449.348 kb on + strandat 3449.348 kb on + strandat 3449.350 kb on + strandat 3449.351 kb on - strandat 3449.353 kb on + strandat 3449.354 kb on - strandat 3449.354 kb on - strandat 3449.788 kb on - strand, within SMc03784at 3449.955 kb on + strand, within SMc03784at 3449.955 kb on + strand, within SMc03784at 3449.956 kb on - strand, within SMc03784at 3449.956 kb on - strand, within SMc03784at 3450.273 kb on + strand, within SMc03784at 3450.273 kb on + strand, within SMc03784at 3450.274 kb on - strand, within SMc03784at 3450.274 kb on - strand, within SMc03784at 3450.274 kb on - strand, within SMc03784at 3450.675 kb on - strandat 3450.735 kb on - strandat 3450.853 kb on - strand, within SMc03785at 3450.939 kb on + strand, within SMc03785at 3450.999 kb on + strand, within SMc03785at 3451.045 kb on - strand, within SMc03785at 3451.209 kb on + strandat 3451.436 kb on + strandat 3451.436 kb on + strandat 3451.467 kb on + strandat 3451.468 kb on - strandat 3451.559 kb on + strand, within SMc03786at 3451.560 kb on - strand, within SMc03786at 3451.611 kb on + strand, within SMc03786at 3451.648 kb on + strand, within SMc03786

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,449,348 + +2.1
3,449,348 + +1.1
3,449,350 + -0.5
3,449,351 - -2.7
3,449,353 + +0.9
3,449,354 - +0.1
3,449,354 - -2.7
3,449,788 - SMc03784 0.27 -1.7
3,449,955 + SMc03784 0.41 -2.4
3,449,955 + SMc03784 0.41 -4.2
3,449,956 - SMc03784 0.41 +0.1
3,449,956 - SMc03784 0.41 -0.5
3,450,273 + SMc03784 0.68 -0.0
3,450,273 + SMc03784 0.68 +0.3
3,450,274 - SMc03784 0.68 +0.1
3,450,274 - SMc03784 0.68 +0.6
3,450,274 - SMc03784 0.68 +1.2
3,450,675 - -2.2
3,450,735 - -1.2
3,450,853 - SMc03785 0.21 -2.4
3,450,939 + SMc03785 0.38 +0.3
3,450,999 + SMc03785 0.50 -1.0
3,451,045 - SMc03785 0.59 -2.0
3,451,209 + -0.6
3,451,436 + +0.5
3,451,436 + +0.5
3,451,467 + -1.1
3,451,468 - -0.8
3,451,559 + SMc03786 0.19 -0.2
3,451,560 - SMc03786 0.19 +0.5
3,451,611 + SMc03786 0.30 +0.5
3,451,648 + SMc03786 0.37 -0.5

Or see this region's nucleotide sequence