Strain Fitness in Sinorhizobium meliloti 1021 around SMc03782

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03780 and SMc03781 are separated by 152 nucleotidesSMc03781 and SMc03782 are separated by 132 nucleotidesSMc03782 and SMc03783 overlap by 11 nucleotides SMc03780: SMc03780 - hypothetical protein, at 3,445,325 to 3,445,816 SMc03780 SMc03781: SMc03781 - rRNA large subunit methyltransferase, at 3,445,969 to 3,446,451 SMc03781 SMc03782: SMc03782 - signal peptide protein, at 3,446,584 to 3,447,966 SMc03782 SMc03783: SMc03783 - carboxy-terminal processing protease precursor signal peptide protein, at 3,447,956 to 3,449,278 SMc03783 Position (kb) 3446 3447 3448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3445.760 kb on + strand, within SMc03780at 3445.761 kb on - strand, within SMc03780at 3445.898 kb on + strandat 3445.932 kb on + strandat 3445.974 kb on + strandat 3445.974 kb on + strandat 3446.252 kb on + strand, within SMc03781at 3446.252 kb on + strand, within SMc03781at 3446.253 kb on - strand, within SMc03781at 3446.253 kb on - strand, within SMc03781at 3446.282 kb on + strand, within SMc03781at 3446.405 kb on - strandat 3446.438 kb on - strandat 3446.493 kb on + strandat 3446.493 kb on + strandat 3446.493 kb on + strandat 3446.493 kb on + strandat 3446.497 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,445,760 + SMc03780 0.88 -3.4
3,445,761 - SMc03780 0.89 +0.2
3,445,898 + +0.3
3,445,932 + -3.8
3,445,974 + -1.5
3,445,974 + +0.2
3,446,252 + SMc03781 0.59 +1.2
3,446,252 + SMc03781 0.59 -0.2
3,446,253 - SMc03781 0.59 +0.3
3,446,253 - SMc03781 0.59 -2.5
3,446,282 + SMc03781 0.65 +0.8
3,446,405 - -0.0
3,446,438 - +1.7
3,446,493 + +2.5
3,446,493 + -0.3
3,446,493 + +0.3
3,446,493 + -0.3
3,446,497 + +0.6

Or see this region's nucleotide sequence