Strain Fitness in Sinorhizobium meliloti 1021 around SMc03262

Experiment: L-Asparagine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03260 and SMc03262 are separated by 524 nucleotides SMc03260: SMc03260 - transposase, at 3,375,747 to 3,377,081 SMc03260 SMc03262: SMc03262 - hypothetical protein, at 3,377,606 to 3,377,863 SMc03262 Position (kb) 3377 3378Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3377.226 kb on + strandat 3377.256 kb on + strandat 3377.256 kb on + strandat 3377.257 kb on - strandat 3377.257 kb on - strandat 3377.257 kb on - strandat 3377.551 kb on + strandat 3377.552 kb on - strandat 3377.552 kb on - strandat 3377.552 kb on - strandat 3377.552 kb on - strandat 3377.552 kb on - strandat 3377.608 kb on - strandat 3377.741 kb on + strand, within SMc03262at 3377.742 kb on - strand, within SMc03262at 3377.764 kb on + strand, within SMc03262at 3377.764 kb on + strand, within SMc03262at 3377.764 kb on + strand, within SMc03262at 3377.764 kb on + strand, within SMc03262at 3377.764 kb on + strand, within SMc03262at 3377.764 kb on + strand, within SMc03262at 3377.764 kb on + strand, within SMc03262at 3377.764 kb on + strand, within SMc03262at 3377.765 kb on - strand, within SMc03262at 3377.765 kb on - strand, within SMc03262at 3377.765 kb on - strand, within SMc03262at 3377.765 kb on - strand, within SMc03262at 3377.765 kb on - strand, within SMc03262at 3377.767 kb on + strand, within SMc03262at 3377.768 kb on - strand, within SMc03262at 3377.839 kb on + strandat 3377.880 kb on - strandat 3377.889 kb on + strandat 3377.955 kb on - strandat 3378.035 kb on + strandat 3378.036 kb on - strandat 3378.038 kb on - strandat 3378.095 kb on + strandat 3378.158 kb on + strandat 3378.158 kb on + strandat 3378.158 kb on + strandat 3378.158 kb on + strandat 3378.158 kb on + strandat 3378.158 kb on + strandat 3378.159 kb on - strandat 3378.159 kb on - strandat 3378.159 kb on - strandat 3378.168 kb on + strandat 3378.213 kb on - strandat 3378.299 kb on + strandat 3378.299 kb on + strandat 3378.300 kb on - strandat 3378.320 kb on + strandat 3378.320 kb on + strandat 3378.320 kb on + strandat 3378.321 kb on - strandat 3378.321 kb on - strandat 3378.321 kb on - strandat 3378.321 kb on - strandat 3378.332 kb on - strandat 3378.332 kb on - strandat 3378.332 kb on - strandat 3378.580 kb on - strandat 3378.596 kb on - strandat 3378.596 kb on - strandat 3378.667 kb on - strandat 3378.675 kb on + strandat 3378.676 kb on - strandat 3378.676 kb on - strandat 3378.682 kb on - strandat 3378.705 kb on + strandat 3378.705 kb on + strandat 3378.705 kb on + strandat 3378.705 kb on + strandat 3378.706 kb on - strandat 3378.706 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
remove
3,377,226 + -3.2
3,377,256 + -1.2
3,377,256 + +0.4
3,377,257 - -2.5
3,377,257 - +0.9
3,377,257 - -1.5
3,377,551 + +0.0
3,377,552 - -1.5
3,377,552 - +0.0
3,377,552 - -2.1
3,377,552 - -0.5
3,377,552 - -1.4
3,377,608 - +0.3
3,377,741 + SMc03262 0.52 -0.1
3,377,742 - SMc03262 0.53 +0.4
3,377,764 + SMc03262 0.61 -1.8
3,377,764 + SMc03262 0.61 -2.0
3,377,764 + SMc03262 0.61 -1.6
3,377,764 + SMc03262 0.61 -2.5
3,377,764 + SMc03262 0.61 -0.6
3,377,764 + SMc03262 0.61 +0.5
3,377,764 + SMc03262 0.61 -1.4
3,377,764 + SMc03262 0.61 -1.4
3,377,765 - SMc03262 0.62 -1.6
3,377,765 - SMc03262 0.62 -2.4
3,377,765 - SMc03262 0.62 -1.9
3,377,765 - SMc03262 0.62 +0.8
3,377,765 - SMc03262 0.62 +0.0
3,377,767 + SMc03262 0.62 +1.1
3,377,768 - SMc03262 0.63 +0.5
3,377,839 + +3.7
3,377,880 - -0.9
3,377,889 + -2.5
3,377,955 - -1.7
3,378,035 + -0.6
3,378,036 - -1.3
3,378,038 - -0.3
3,378,095 + -3.4
3,378,158 + -2.4
3,378,158 + +0.4
3,378,158 + +0.2
3,378,158 + -0.0
3,378,158 + -1.1
3,378,158 + +0.6
3,378,159 - -0.1
3,378,159 - +1.8
3,378,159 - +0.3
3,378,168 + +0.2
3,378,213 - -4.1
3,378,299 + +0.5
3,378,299 + +0.7
3,378,300 - -1.5
3,378,320 + +0.1
3,378,320 + +0.7
3,378,320 + -1.6
3,378,321 - -2.1
3,378,321 - -2.1
3,378,321 - +2.1
3,378,321 - -1.3
3,378,332 - +0.6
3,378,332 - -2.3
3,378,332 - -1.0
3,378,580 - -2.8
3,378,596 - -1.7
3,378,596 - +1.4
3,378,667 - +1.1
3,378,675 + +1.3
3,378,676 - +0.2
3,378,676 - +1.8
3,378,682 - +1.0
3,378,705 + -0.3
3,378,705 + +0.1
3,378,705 + -0.2
3,378,705 + -1.0
3,378,706 - -3.9
3,378,706 - -0.4

Or see this region's nucleotide sequence