Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03032 and SMc03033 overlap by 4 nucleotides SMc03033 and SMc03034 overlap by 4 nucleotides SMc03034 and SMc03035 are separated by 15 nucleotides
SMc03032: SMc03032 - flagellar basal body P-ring protein, at 727,404 to 728,519
SMc03032
SMc03033: SMc03033 - hypothetical protein, at 728,516 to 729,055
SMc03033
SMc03034: SMc03034 - flagellar basal body L-ring protein, at 729,052 to 729,762
SMc03034
SMc03035: SMc03035 - flagellar transmembrane protein, at 729,778 to 730,269
SMc03035
Position (kb) 728
729
730 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 727.821 kb on + strand, within SMc03032 at 727.822 kb on - strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.218 kb on + strand, within SMc03032 at 728.219 kb on - strand, within SMc03032 at 728.219 kb on - strand, within SMc03032 at 728.256 kb on + strand, within SMc03032 at 728.257 kb on - strand, within SMc03032 at 728.334 kb on + strand at 728.708 kb on + strand, within SMc03033 at 728.708 kb on + strand, within SMc03033 at 728.709 kb on - strand, within SMc03033 at 728.709 kb on - strand, within SMc03033 at 728.806 kb on + strand, within SMc03033 at 728.807 kb on - strand, within SMc03033 at 728.858 kb on + strand, within SMc03033 at 728.858 kb on + strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.286 kb on - strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.297 kb on - strand, within SMc03034 at 729.297 kb on - strand, within SMc03034 at 729.653 kb on - strand, within SMc03034 at 729.653 kb on - strand, within SMc03034 at 729.683 kb on - strand, within SMc03034 at 730.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 727,821 + SMc03032 0.37 -0.3 727,822 - SMc03032 0.37 -2.0 728,040 + SMc03032 0.57 +0.1 728,040 + SMc03032 0.57 -2.7 728,040 + SMc03032 0.57 -2.2 728,040 + SMc03032 0.57 +0.5 728,218 + SMc03032 0.73 +1.2 728,219 - SMc03032 0.73 -0.1 728,219 - SMc03032 0.73 -1.8 728,256 + SMc03032 0.76 +0.8 728,257 - SMc03032 0.76 +0.2 728,334 + +2.0 728,708 + SMc03033 0.36 +0.8 728,708 + SMc03033 0.36 +0.0 728,709 - SMc03033 0.36 +0.1 728,709 - SMc03033 0.36 +0.9 728,806 + SMc03033 0.54 -3.8 728,807 - SMc03033 0.54 +2.1 728,858 + SMc03033 0.63 +1.6 728,858 + SMc03033 0.63 -1.4 728,859 - SMc03033 0.64 -1.4 728,859 - SMc03033 0.64 -1.6 728,859 - SMc03033 0.64 +0.1 728,859 - SMc03033 0.64 -0.3 729,196 + SMc03034 0.20 +0.3 729,196 + SMc03034 0.20 -2.4 729,196 + SMc03034 0.20 +0.0 729,196 + SMc03034 0.20 +0.6 729,197 - SMc03034 0.20 +1.5 729,197 - SMc03034 0.20 +0.1 729,197 - SMc03034 0.20 -0.2 729,197 - SMc03034 0.20 -0.6 729,286 - SMc03034 0.33 +0.4 729,296 + SMc03034 0.34 +0.2 729,296 + SMc03034 0.34 -2.5 729,296 + SMc03034 0.34 +1.3 729,296 + SMc03034 0.34 -1.0 729,297 - SMc03034 0.34 +0.6 729,297 - SMc03034 0.34 -2.8 729,653 - SMc03034 0.85 -3.3 729,653 - SMc03034 0.85 +2.0 729,683 - SMc03034 0.89 -1.1 730,014 + +2.0
Or see this region's nucleotide sequence