Strain Fitness in Sinorhizobium meliloti 1021 around SMc02274

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02273 and SMc02274 are separated by 367 nucleotidesSMc02274 and SMc02275 are separated by 309 nucleotides SMc02273: SMc02273 - fatty acid synthase transmembrane protein, at 640,572 to 648,086 SMc02273 SMc02274: SMc02274 - capsule polysaccharide exporter protein, at 648,454 to 649,677 SMc02274 SMc02275: SMc02275 - pyrazinamidase/nicotinamidase (Includes: pyrazinamidase, nicotinamidase) protein, at 649,987 to 650,622 SMc02275 Position (kb) 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 647.490 kb on - strandat 647.628 kb on - strandat 647.668 kb on + strandat 647.668 kb on + strandat 647.669 kb on - strandat 647.734 kb on + strandat 647.735 kb on - strandat 647.735 kb on - strandat 647.834 kb on + strandat 647.835 kb on - strandat 647.835 kb on - strandat 647.836 kb on + strandat 647.836 kb on + strandat 647.836 kb on + strandat 647.836 kb on + strandat 647.836 kb on + strandat 647.836 kb on + strandat 647.836 kb on + strandat 647.836 kb on + strandat 647.836 kb on + strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.837 kb on - strandat 647.884 kb on + strandat 647.884 kb on + strandat 647.884 kb on + strandat 647.884 kb on + strandat 647.889 kb on - strandat 647.889 kb on - strandat 647.917 kb on + strandat 647.918 kb on - strandat 648.069 kb on + strandat 648.088 kb on + strandat 648.088 kb on + strandat 648.088 kb on + strandat 648.088 kb on + strandat 648.088 kb on + strandat 648.088 kb on + strandat 648.089 kb on - strandat 648.194 kb on - strandat 648.208 kb on - strandat 648.210 kb on + strandat 648.210 kb on + strandat 648.222 kb on - strandat 648.222 kb on - strandat 648.228 kb on + strandat 648.228 kb on + strandat 648.229 kb on - strandat 648.256 kb on + strandat 648.260 kb on + strandat 648.260 kb on + strandat 648.262 kb on + strandat 648.262 kb on + strandat 648.262 kb on + strandat 648.263 kb on - strandat 648.263 kb on - strandat 648.263 kb on - strandat 648.285 kb on + strandat 648.285 kb on + strandat 648.285 kb on + strandat 648.286 kb on - strandat 648.286 kb on - strandat 648.306 kb on + strandat 648.313 kb on + strandat 648.350 kb on + strandat 648.447 kb on + strandat 648.453 kb on + strandat 649.687 kb on - strandat 649.687 kb on - strandat 649.778 kb on - strandat 649.779 kb on + strandat 649.780 kb on - strandat 649.845 kb on + strandat 649.845 kb on + strandat 649.845 kb on + strandat 649.845 kb on + strandat 649.846 kb on - strandat 649.911 kb on + strandat 649.916 kb on + strandat 649.916 kb on + strandat 649.917 kb on - strandat 649.919 kb on + strandat 649.942 kb on + strandat 649.942 kb on + strandat 650.052 kb on + strand, within SMc02275at 650.339 kb on + strand, within SMc02275at 650.441 kb on + strand, within SMc02275at 650.441 kb on + strand, within SMc02275at 650.441 kb on + strand, within SMc02275at 650.441 kb on + strand, within SMc02275at 650.620 kb on + strandat 650.620 kb on + strandat 650.620 kb on + strandat 650.674 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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647,490 - +3.5
647,628 - -1.4
647,668 + +1.0
647,668 + +1.5
647,669 - -1.3
647,734 + -0.2
647,735 - +0.9
647,735 - +0.5
647,834 + -2.2
647,835 - +1.4
647,835 - +1.0
647,836 + -0.0
647,836 + +0.1
647,836 + +1.2
647,836 + +1.5
647,836 + +1.0
647,836 + -3.0
647,836 + +0.2
647,836 + +3.2
647,836 + -3.3
647,837 - +1.1
647,837 - +1.5
647,837 - +3.4
647,837 - +0.1
647,837 - +0.3
647,837 - +0.5
647,837 - +2.1
647,837 - +1.1
647,837 - +2.3
647,837 - +2.5
647,837 - +0.7
647,837 - +1.4
647,837 - +1.2
647,884 + +1.5
647,884 + -1.9
647,884 + +2.3
647,884 + +0.9
647,889 - -0.6
647,889 - +0.4
647,917 + +0.9
647,918 - +3.0
648,069 + +0.8
648,088 + +0.7
648,088 + +0.9
648,088 + -0.9
648,088 + +1.0
648,088 + +2.6
648,088 + +1.1
648,089 - +1.1
648,194 - +0.8
648,208 - +0.0
648,210 + +0.3
648,210 + +1.0
648,222 - +2.1
648,222 - -0.0
648,228 + -1.0
648,228 + +0.8
648,229 - -0.1
648,256 + +0.4
648,260 + +2.2
648,260 + +0.4
648,262 + +0.3
648,262 + +1.9
648,262 + -0.4
648,263 - -0.1
648,263 - +1.0
648,263 - +3.6
648,285 + -2.9
648,285 + +0.1
648,285 + -0.1
648,286 - +0.6
648,286 - +0.7
648,306 + +0.2
648,313 + +0.5
648,350 + +0.6
648,447 + +1.2
648,453 + -0.2
649,687 - -0.8
649,687 - -0.3
649,778 - +1.5
649,779 + +0.7
649,780 - -0.1
649,845 + +5.2
649,845 + -1.5
649,845 + +1.0
649,845 + +0.3
649,846 - +0.1
649,911 + -0.8
649,916 + -0.5
649,916 + -0.5
649,917 - +1.6
649,919 + -0.2
649,942 + +0.9
649,942 + -1.6
650,052 + SMc02275 0.10 +0.5
650,339 + SMc02275 0.55 -0.6
650,441 + SMc02275 0.71 +0.6
650,441 + SMc02275 0.71 +1.0
650,441 + SMc02275 0.71 +0.2
650,441 + SMc02275 0.71 +0.6
650,620 + -0.4
650,620 + -0.3
650,620 + -0.4
650,674 + -0.1

Or see this region's nucleotide sequence