Strain Fitness in Sinorhizobium meliloti 1021 around SMc01856

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01857 and SMc01856 are separated by 883 nucleotidesSMc01856 and SMc01855 are separated by 137 nucleotidesSMc01855 and SMc01854 are separated by 198 nucleotides SMc01857: SMc01857 - cell division protein MraZ, at 2,355,926 to 2,356,366 SMc01857 SMc01856: SMc01856 - sarcosine oxidase, at 2,357,250 to 2,358,437 SMc01856 SMc01855: SMc01855 - hypothetical protein, at 2,358,575 to 2,359,114 SMc01855 SMc01854: SMc01854 - amidase (AMPD protein), at 2,359,313 to 2,360,104 SMc01854 Position (kb) 2357 2358 2359Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2356.258 kb on - strand, within SMc01857at 2356.343 kb on - strandat 2356.611 kb on - strandat 2356.655 kb on + strandat 2357.248 kb on - strandat 2357.251 kb on + strandat 2357.251 kb on + strandat 2357.251 kb on + strandat 2357.251 kb on + strandat 2357.251 kb on + strandat 2357.251 kb on + strandat 2357.252 kb on - strandat 2357.252 kb on - strandat 2357.252 kb on - strandat 2357.252 kb on - strandat 2357.406 kb on + strand, within SMc01856at 2357.407 kb on - strand, within SMc01856at 2357.407 kb on - strand, within SMc01856at 2357.408 kb on + strand, within SMc01856at 2357.409 kb on - strand, within SMc01856at 2357.409 kb on - strand, within SMc01856at 2357.409 kb on - strand, within SMc01856at 2357.410 kb on + strand, within SMc01856at 2357.410 kb on + strand, within SMc01856at 2357.410 kb on + strand, within SMc01856at 2357.410 kb on + strand, within SMc01856at 2357.410 kb on + strand, within SMc01856at 2357.410 kb on + strand, within SMc01856at 2357.410 kb on + strand, within SMc01856at 2357.411 kb on - strand, within SMc01856at 2357.411 kb on - strand, within SMc01856at 2357.411 kb on - strand, within SMc01856at 2357.411 kb on - strand, within SMc01856at 2357.417 kb on - strand, within SMc01856at 2357.452 kb on + strand, within SMc01856at 2357.604 kb on + strand, within SMc01856at 2357.604 kb on + strand, within SMc01856at 2357.604 kb on + strand, within SMc01856at 2357.605 kb on - strand, within SMc01856at 2357.605 kb on - strand, within SMc01856at 2357.605 kb on - strand, within SMc01856at 2357.608 kb on + strand, within SMc01856at 2357.608 kb on + strand, within SMc01856at 2357.608 kb on + strand, within SMc01856at 2357.609 kb on - strand, within SMc01856at 2357.626 kb on + strand, within SMc01856at 2357.626 kb on + strand, within SMc01856at 2357.627 kb on - strand, within SMc01856at 2357.647 kb on + strand, within SMc01856at 2357.648 kb on - strand, within SMc01856at 2357.648 kb on - strand, within SMc01856at 2357.650 kb on + strand, within SMc01856at 2357.650 kb on + strand, within SMc01856at 2357.650 kb on + strand, within SMc01856at 2357.651 kb on - strand, within SMc01856at 2357.701 kb on + strandat 2357.702 kb on - strand, within SMc01856at 2357.702 kb on - strand, within SMc01856at 2357.970 kb on + strand, within SMc01856at 2357.970 kb on + strand, within SMc01856at 2357.970 kb on + strand, within SMc01856at 2357.970 kb on + strand, within SMc01856at 2357.971 kb on - strand, within SMc01856at 2357.971 kb on - strand, within SMc01856at 2357.971 kb on - strand, within SMc01856at 2357.975 kb on - strand, within SMc01856at 2358.008 kb on - strand, within SMc01856at 2358.113 kb on + strand, within SMc01856at 2358.114 kb on - strand, within SMc01856at 2358.116 kb on - strand, within SMc01856at 2358.283 kb on + strand, within SMc01856at 2358.470 kb on + strandat 2358.470 kb on + strandat 2358.470 kb on + strandat 2358.471 kb on - strandat 2358.471 kb on - strandat 2358.571 kb on + strandat 2358.661 kb on - strand, within SMc01855at 2358.717 kb on + strand, within SMc01855at 2358.718 kb on - strand, within SMc01855at 2358.718 kb on - strand, within SMc01855at 2358.737 kb on - strand, within SMc01855at 2358.775 kb on + strand, within SMc01855at 2358.777 kb on + strand, within SMc01855at 2358.777 kb on + strand, within SMc01855at 2358.907 kb on - strand, within SMc01855at 2358.907 kb on - strand, within SMc01855at 2358.937 kb on + strand, within SMc01855at 2358.937 kb on + strand, within SMc01855at 2358.937 kb on + strand, within SMc01855at 2358.938 kb on - strand, within SMc01855at 2358.938 kb on - strand, within SMc01855at 2358.938 kb on - strand, within SMc01855at 2358.938 kb on - strand, within SMc01855at 2358.938 kb on - strand, within SMc01855at 2358.939 kb on + strand, within SMc01855at 2358.939 kb on + strand, within SMc01855at 2359.044 kb on + strand, within SMc01855at 2359.044 kb on + strand, within SMc01855at 2359.045 kb on - strand, within SMc01855at 2359.051 kb on + strand, within SMc01855at 2359.106 kb on + strandat 2359.106 kb on + strandat 2359.116 kb on + strandat 2359.116 kb on + strandat 2359.265 kb on + strandat 2359.265 kb on + strandat 2359.265 kb on + strandat 2359.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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2,356,258 - SMc01857 0.75 -1.8
2,356,343 - -0.0
2,356,611 - +1.1
2,356,655 + +0.6
2,357,248 - +2.0
2,357,251 + -0.3
2,357,251 + -1.6
2,357,251 + +0.1
2,357,251 + +0.6
2,357,251 + +1.4
2,357,251 + -4.4
2,357,252 - +0.3
2,357,252 - +0.5
2,357,252 - -0.2
2,357,252 - +0.7
2,357,406 + SMc01856 0.13 -2.4
2,357,407 - SMc01856 0.13 -2.5
2,357,407 - SMc01856 0.13 +0.3
2,357,408 + SMc01856 0.13 -2.0
2,357,409 - SMc01856 0.13 +0.3
2,357,409 - SMc01856 0.13 +0.3
2,357,409 - SMc01856 0.13 +0.1
2,357,410 + SMc01856 0.13 +0.3
2,357,410 + SMc01856 0.13 -0.5
2,357,410 + SMc01856 0.13 +0.7
2,357,410 + SMc01856 0.13 +0.2
2,357,410 + SMc01856 0.13 -1.2
2,357,410 + SMc01856 0.13 -2.8
2,357,410 + SMc01856 0.13 -0.2
2,357,411 - SMc01856 0.14 -2.4
2,357,411 - SMc01856 0.14 +0.0
2,357,411 - SMc01856 0.14 -0.4
2,357,411 - SMc01856 0.14 -0.9
2,357,417 - SMc01856 0.14 -0.2
2,357,452 + SMc01856 0.17 +0.4
2,357,604 + SMc01856 0.30 -0.6
2,357,604 + SMc01856 0.30 -2.9
2,357,604 + SMc01856 0.30 -0.5
2,357,605 - SMc01856 0.30 +0.4
2,357,605 - SMc01856 0.30 -2.4
2,357,605 - SMc01856 0.30 -1.9
2,357,608 + SMc01856 0.30 -0.1
2,357,608 + SMc01856 0.30 -0.8
2,357,608 + SMc01856 0.30 -2.4
2,357,609 - SMc01856 0.30 +1.3
2,357,626 + SMc01856 0.32 +0.7
2,357,626 + SMc01856 0.32 -0.4
2,357,627 - SMc01856 0.32 -3.0
2,357,647 + SMc01856 0.33 +0.9
2,357,648 - SMc01856 0.34 -2.7
2,357,648 - SMc01856 0.34 -0.4
2,357,650 + SMc01856 0.34 -3.0
2,357,650 + SMc01856 0.34 -0.7
2,357,650 + SMc01856 0.34 +0.8
2,357,651 - SMc01856 0.34 +0.1
2,357,701 + -0.1
2,357,702 - SMc01856 0.38 -3.2
2,357,702 - SMc01856 0.38 +0.5
2,357,970 + SMc01856 0.61 +0.5
2,357,970 + SMc01856 0.61 -1.7
2,357,970 + SMc01856 0.61 +1.3
2,357,970 + SMc01856 0.61 -2.0
2,357,971 - SMc01856 0.61 -2.8
2,357,971 - SMc01856 0.61 +0.7
2,357,971 - SMc01856 0.61 -0.2
2,357,975 - SMc01856 0.61 +0.8
2,358,008 - SMc01856 0.64 -0.4
2,358,113 + SMc01856 0.73 -0.6
2,358,114 - SMc01856 0.73 -0.5
2,358,116 - SMc01856 0.73 +1.9
2,358,283 + SMc01856 0.87 +0.0
2,358,470 + +0.6
2,358,470 + +1.3
2,358,470 + -0.1
2,358,471 - -1.8
2,358,471 - +0.2
2,358,571 + +1.0
2,358,661 - SMc01855 0.16 -1.3
2,358,717 + SMc01855 0.26 +3.2
2,358,718 - SMc01855 0.26 -0.9
2,358,718 - SMc01855 0.26 +1.5
2,358,737 - SMc01855 0.30 -1.3
2,358,775 + SMc01855 0.37 -1.9
2,358,777 + SMc01855 0.37 +0.4
2,358,777 + SMc01855 0.37 +1.6
2,358,907 - SMc01855 0.61 +0.3
2,358,907 - SMc01855 0.61 -0.6
2,358,937 + SMc01855 0.67 -0.4
2,358,937 + SMc01855 0.67 +0.6
2,358,937 + SMc01855 0.67 +0.8
2,358,938 - SMc01855 0.67 -3.1
2,358,938 - SMc01855 0.67 -0.4
2,358,938 - SMc01855 0.67 +0.3
2,358,938 - SMc01855 0.67 +0.4
2,358,938 - SMc01855 0.67 +0.7
2,358,939 + SMc01855 0.67 -2.4
2,358,939 + SMc01855 0.67 +0.7
2,359,044 + SMc01855 0.87 -0.1
2,359,044 + SMc01855 0.87 +0.4
2,359,045 - SMc01855 0.87 +0.7
2,359,051 + SMc01855 0.88 -3.6
2,359,106 + -0.3
2,359,106 + +0.1
2,359,116 + +0.8
2,359,116 + -2.8
2,359,265 + +0.5
2,359,265 + +1.4
2,359,265 + -1.0
2,359,319 + +1.6

Or see this region's nucleotide sequence