Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01857 and SMc01856 are separated by 883 nucleotides SMc01856 and SMc01855 are separated by 137 nucleotides SMc01855 and SMc01854 are separated by 198 nucleotides
SMc01857: SMc01857 - cell division protein MraZ, at 2,355,926 to 2,356,366
SMc01857
SMc01856: SMc01856 - sarcosine oxidase, at 2,357,250 to 2,358,437
SMc01856
SMc01855: SMc01855 - hypothetical protein, at 2,358,575 to 2,359,114
SMc01855
SMc01854: SMc01854 - amidase (AMPD protein), at 2,359,313 to 2,360,104
SMc01854
Position (kb)
2357
2358
2359 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2356.258 kb on - strand, within SMc01857 at 2356.343 kb on - strand at 2356.611 kb on - strand at 2356.655 kb on + strand at 2357.248 kb on - strand at 2357.251 kb on + strand at 2357.251 kb on + strand at 2357.251 kb on + strand at 2357.251 kb on + strand at 2357.251 kb on + strand at 2357.251 kb on + strand at 2357.252 kb on - strand at 2357.252 kb on - strand at 2357.252 kb on - strand at 2357.252 kb on - strand at 2357.406 kb on + strand, within SMc01856 at 2357.407 kb on - strand, within SMc01856 at 2357.407 kb on - strand, within SMc01856 at 2357.408 kb on + strand, within SMc01856 at 2357.409 kb on - strand, within SMc01856 at 2357.409 kb on - strand, within SMc01856 at 2357.409 kb on - strand, within SMc01856 at 2357.410 kb on + strand, within SMc01856 at 2357.410 kb on + strand, within SMc01856 at 2357.410 kb on + strand, within SMc01856 at 2357.410 kb on + strand, within SMc01856 at 2357.410 kb on + strand, within SMc01856 at 2357.410 kb on + strand, within SMc01856 at 2357.410 kb on + strand, within SMc01856 at 2357.411 kb on - strand, within SMc01856 at 2357.411 kb on - strand, within SMc01856 at 2357.411 kb on - strand, within SMc01856 at 2357.411 kb on - strand, within SMc01856 at 2357.417 kb on - strand, within SMc01856 at 2357.452 kb on + strand, within SMc01856 at 2357.604 kb on + strand, within SMc01856 at 2357.604 kb on + strand, within SMc01856 at 2357.604 kb on + strand, within SMc01856 at 2357.605 kb on - strand, within SMc01856 at 2357.605 kb on - strand, within SMc01856 at 2357.605 kb on - strand, within SMc01856 at 2357.608 kb on + strand, within SMc01856 at 2357.608 kb on + strand, within SMc01856 at 2357.608 kb on + strand, within SMc01856 at 2357.609 kb on - strand, within SMc01856 at 2357.626 kb on + strand, within SMc01856 at 2357.626 kb on + strand, within SMc01856 at 2357.627 kb on - strand, within SMc01856 at 2357.647 kb on + strand, within SMc01856 at 2357.648 kb on - strand, within SMc01856 at 2357.648 kb on - strand, within SMc01856 at 2357.650 kb on + strand, within SMc01856 at 2357.650 kb on + strand, within SMc01856 at 2357.650 kb on + strand, within SMc01856 at 2357.651 kb on - strand, within SMc01856 at 2357.701 kb on + strand at 2357.702 kb on - strand, within SMc01856 at 2357.702 kb on - strand, within SMc01856 at 2357.970 kb on + strand, within SMc01856 at 2357.970 kb on + strand, within SMc01856 at 2357.970 kb on + strand, within SMc01856 at 2357.970 kb on + strand, within SMc01856 at 2357.971 kb on - strand, within SMc01856 at 2357.971 kb on - strand, within SMc01856 at 2357.971 kb on - strand, within SMc01856 at 2357.975 kb on - strand, within SMc01856 at 2358.008 kb on - strand, within SMc01856 at 2358.113 kb on + strand, within SMc01856 at 2358.114 kb on - strand, within SMc01856 at 2358.116 kb on - strand, within SMc01856 at 2358.283 kb on + strand, within SMc01856 at 2358.470 kb on + strand at 2358.470 kb on + strand at 2358.470 kb on + strand at 2358.471 kb on - strand at 2358.471 kb on - strand at 2358.571 kb on + strand at 2358.661 kb on - strand, within SMc01855 at 2358.717 kb on + strand, within SMc01855 at 2358.718 kb on - strand, within SMc01855 at 2358.718 kb on - strand, within SMc01855 at 2358.737 kb on - strand, within SMc01855 at 2358.775 kb on + strand, within SMc01855 at 2358.777 kb on + strand, within SMc01855 at 2358.777 kb on + strand, within SMc01855 at 2358.907 kb on - strand, within SMc01855 at 2358.907 kb on - strand, within SMc01855 at 2358.937 kb on + strand, within SMc01855 at 2358.937 kb on + strand, within SMc01855 at 2358.937 kb on + strand, within SMc01855 at 2358.938 kb on - strand, within SMc01855 at 2358.938 kb on - strand, within SMc01855 at 2358.938 kb on - strand, within SMc01855 at 2358.938 kb on - strand, within SMc01855 at 2358.938 kb on - strand, within SMc01855 at 2358.939 kb on + strand, within SMc01855 at 2358.939 kb on + strand, within SMc01855 at 2359.044 kb on + strand, within SMc01855 at 2359.044 kb on + strand, within SMc01855 at 2359.045 kb on - strand, within SMc01855 at 2359.051 kb on + strand, within SMc01855 at 2359.106 kb on + strand at 2359.106 kb on + strand at 2359.116 kb on + strand at 2359.116 kb on + strand at 2359.265 kb on + strand at 2359.265 kb on + strand at 2359.265 kb on + strand at 2359.319 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 2,356,258 - SMc01857 0.75 -1.8 2,356,343 - -0.0 2,356,611 - +1.1 2,356,655 + +0.6 2,357,248 - +2.0 2,357,251 + -0.3 2,357,251 + -1.6 2,357,251 + +0.1 2,357,251 + +0.6 2,357,251 + +1.4 2,357,251 + -4.4 2,357,252 - +0.3 2,357,252 - +0.5 2,357,252 - -0.2 2,357,252 - +0.7 2,357,406 + SMc01856 0.13 -2.4 2,357,407 - SMc01856 0.13 -2.5 2,357,407 - SMc01856 0.13 +0.3 2,357,408 + SMc01856 0.13 -2.0 2,357,409 - SMc01856 0.13 +0.3 2,357,409 - SMc01856 0.13 +0.3 2,357,409 - SMc01856 0.13 +0.1 2,357,410 + SMc01856 0.13 +0.3 2,357,410 + SMc01856 0.13 -0.5 2,357,410 + SMc01856 0.13 +0.7 2,357,410 + SMc01856 0.13 +0.2 2,357,410 + SMc01856 0.13 -1.2 2,357,410 + SMc01856 0.13 -2.8 2,357,410 + SMc01856 0.13 -0.2 2,357,411 - SMc01856 0.14 -2.4 2,357,411 - SMc01856 0.14 +0.0 2,357,411 - SMc01856 0.14 -0.4 2,357,411 - SMc01856 0.14 -0.9 2,357,417 - SMc01856 0.14 -0.2 2,357,452 + SMc01856 0.17 +0.4 2,357,604 + SMc01856 0.30 -0.6 2,357,604 + SMc01856 0.30 -2.9 2,357,604 + SMc01856 0.30 -0.5 2,357,605 - SMc01856 0.30 +0.4 2,357,605 - SMc01856 0.30 -2.4 2,357,605 - SMc01856 0.30 -1.9 2,357,608 + SMc01856 0.30 -0.1 2,357,608 + SMc01856 0.30 -0.8 2,357,608 + SMc01856 0.30 -2.4 2,357,609 - SMc01856 0.30 +1.3 2,357,626 + SMc01856 0.32 +0.7 2,357,626 + SMc01856 0.32 -0.4 2,357,627 - SMc01856 0.32 -3.0 2,357,647 + SMc01856 0.33 +0.9 2,357,648 - SMc01856 0.34 -2.7 2,357,648 - SMc01856 0.34 -0.4 2,357,650 + SMc01856 0.34 -3.0 2,357,650 + SMc01856 0.34 -0.7 2,357,650 + SMc01856 0.34 +0.8 2,357,651 - SMc01856 0.34 +0.1 2,357,701 + -0.1 2,357,702 - SMc01856 0.38 -3.2 2,357,702 - SMc01856 0.38 +0.5 2,357,970 + SMc01856 0.61 +0.5 2,357,970 + SMc01856 0.61 -1.7 2,357,970 + SMc01856 0.61 +1.3 2,357,970 + SMc01856 0.61 -2.0 2,357,971 - SMc01856 0.61 -2.8 2,357,971 - SMc01856 0.61 +0.7 2,357,971 - SMc01856 0.61 -0.2 2,357,975 - SMc01856 0.61 +0.8 2,358,008 - SMc01856 0.64 -0.4 2,358,113 + SMc01856 0.73 -0.6 2,358,114 - SMc01856 0.73 -0.5 2,358,116 - SMc01856 0.73 +1.9 2,358,283 + SMc01856 0.87 +0.0 2,358,470 + +0.6 2,358,470 + +1.3 2,358,470 + -0.1 2,358,471 - -1.8 2,358,471 - +0.2 2,358,571 + +1.0 2,358,661 - SMc01855 0.16 -1.3 2,358,717 + SMc01855 0.26 +3.2 2,358,718 - SMc01855 0.26 -0.9 2,358,718 - SMc01855 0.26 +1.5 2,358,737 - SMc01855 0.30 -1.3 2,358,775 + SMc01855 0.37 -1.9 2,358,777 + SMc01855 0.37 +0.4 2,358,777 + SMc01855 0.37 +1.6 2,358,907 - SMc01855 0.61 +0.3 2,358,907 - SMc01855 0.61 -0.6 2,358,937 + SMc01855 0.67 -0.4 2,358,937 + SMc01855 0.67 +0.6 2,358,937 + SMc01855 0.67 +0.8 2,358,938 - SMc01855 0.67 -3.1 2,358,938 - SMc01855 0.67 -0.4 2,358,938 - SMc01855 0.67 +0.3 2,358,938 - SMc01855 0.67 +0.4 2,358,938 - SMc01855 0.67 +0.7 2,358,939 + SMc01855 0.67 -2.4 2,358,939 + SMc01855 0.67 +0.7 2,359,044 + SMc01855 0.87 -0.1 2,359,044 + SMc01855 0.87 +0.4 2,359,045 - SMc01855 0.87 +0.7 2,359,051 + SMc01855 0.88 -3.6 2,359,106 + -0.3 2,359,106 + +0.1 2,359,116 + +0.8 2,359,116 + -2.8 2,359,265 + +0.5 2,359,265 + +1.4 2,359,265 + -1.0 2,359,319 + +1.6
Or see this region's nucleotide sequence