Strain Fitness in Sinorhizobium meliloti 1021 around SMc01757

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01756 and SMc01757 are separated by 176 nucleotidesSMc01757 and SMc01758 are separated by 343 nucleotides SMc01756: SMc01756 - aspartyl-tRNA synthetase, at 1,301,147 to 1,302,934 SMc01756 SMc01757: SMc01757 - hypothetical protein, at 1,303,111 to 1,303,491 SMc01757 SMc01758: SMc01758 - chaperonin GroEL, at 1,303,835 to 1,305,463 SMc01758 Position (kb) 1303 1304Strain fitness (log2 ratio) -1 0 1 2at 1303.038 kb on - strandat 1303.271 kb on + strand, within SMc01757at 1303.321 kb on + strand, within SMc01757at 1303.421 kb on - strand, within SMc01757at 1303.677 kb on - strandat 1304.385 kb on + strand, within SMc01758at 1304.385 kb on + strand, within SMc01758at 1304.385 kb on + strand, within SMc01758at 1304.385 kb on + strand, within SMc01758at 1304.441 kb on - strand, within SMc01758

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,303,038 - -0.3
1,303,271 + SMc01757 0.42 -1.1
1,303,321 + SMc01757 0.55 -0.1
1,303,421 - SMc01757 0.81 -0.9
1,303,677 - -1.0
1,304,385 + SMc01758 0.34 -1.5
1,304,385 + SMc01758 0.34 +0.6
1,304,385 + SMc01758 0.34 +2.0
1,304,385 + SMc01758 0.34 -0.0
1,304,441 - SMc01758 0.37 +0.5

Or see this region's nucleotide sequence