Strain Fitness in Sinorhizobium meliloti 1021 around SMc01332

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01333 and SMc01332 are separated by 499 nucleotidesSMc01332 and SMc01331 are separated by 86 nucleotides SMc01333: SMc01333 - peptide chain release factor 2, at 1,449,419 to 1,450,447 SMc01333 SMc01332: SMc01332 - hypothetical protein, at 1,450,947 to 1,451,447 SMc01332 SMc01331: SMc01331 - inorganic polyphosphate/ATP-NAD kinase, at 1,451,534 to 1,452,307 SMc01331 Position (kb) 1450 1451 1452Strain fitness (log2 ratio) -2 -1 0 1 2at 1450.445 kb on + strandat 1450.493 kb on - strandat 1450.753 kb on + strandat 1450.817 kb on + strandat 1450.828 kb on + strandat 1450.829 kb on - strandat 1450.829 kb on - strandat 1450.839 kb on + strandat 1450.839 kb on + strandat 1450.941 kb on + strandat 1451.100 kb on - strand, within SMc01332at 1451.110 kb on + strand, within SMc01332at 1451.111 kb on - strand, within SMc01332at 1451.237 kb on + strand, within SMc01332at 1451.239 kb on + strand, within SMc01332at 1451.239 kb on + strand, within SMc01332at 1451.239 kb on + strand, within SMc01332at 1451.394 kb on + strand, within SMc01332at 1451.394 kb on + strand, within SMc01332at 1451.507 kb on - strandat 1451.507 kb on - strandat 1451.507 kb on - strandat 1451.507 kb on - strandat 1451.511 kb on + strandat 1451.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,450,445 + +0.4
1,450,493 - +0.9
1,450,753 + -0.2
1,450,817 + +0.6
1,450,828 + +0.2
1,450,829 - -2.2
1,450,829 - -1.5
1,450,839 + +0.4
1,450,839 + +1.4
1,450,941 + +0.1
1,451,100 - SMc01332 0.31 +1.4
1,451,110 + SMc01332 0.33 -0.1
1,451,111 - SMc01332 0.33 -1.4
1,451,237 + SMc01332 0.58 +1.7
1,451,239 + SMc01332 0.58 +2.1
1,451,239 + SMc01332 0.58 -2.3
1,451,239 + SMc01332 0.58 +0.9
1,451,394 + SMc01332 0.89 -0.1
1,451,394 + SMc01332 0.89 -0.4
1,451,507 - +0.4
1,451,507 - +0.3
1,451,507 - +1.7
1,451,507 - -2.1
1,451,511 + -1.5
1,451,512 - -2.3

Or see this region's nucleotide sequence