Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01183 and SMc01251 are separated by 220 nucleotides SMc01251 and SMc01182 are separated by 44 nucleotides
SMc01183: SMc01183 - LexA repressor, at 1,749,452 to 1,750,168
SMc01183
SMc01251: SMc01251 - tRNA-Cys, at 1,750,389 to 1,750,462
SMc01251
SMc01182: SMc01182 - hypothetical protein, at 1,750,507 to 1,751,586
SMc01182
Position (kb)
1750
1751 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1749.668 kb on + strand, within SMc01183 at 1749.860 kb on - strand, within SMc01183 at 1750.167 kb on - strand at 1750.167 kb on - strand at 1750.236 kb on + strand at 1750.236 kb on + strand at 1750.236 kb on + strand at 1750.237 kb on - strand at 1750.254 kb on + strand at 1750.272 kb on + strand at 1750.272 kb on + strand at 1750.290 kb on + strand at 1750.290 kb on + strand at 1750.290 kb on + strand at 1750.300 kb on - strand at 1750.673 kb on + strand, within SMc01182 at 1750.673 kb on + strand, within SMc01182 at 1750.794 kb on + strand, within SMc01182 at 1750.889 kb on + strand, within SMc01182 at 1750.994 kb on + strand, within SMc01182 at 1750.994 kb on + strand, within SMc01182 at 1750.994 kb on + strand, within SMc01182 at 1750.994 kb on + strand, within SMc01182 at 1750.994 kb on + strand, within SMc01182 at 1750.994 kb on + strand at 1750.995 kb on - strand, within SMc01182 at 1750.995 kb on - strand, within SMc01182 at 1750.995 kb on - strand, within SMc01182 at 1750.995 kb on - strand, within SMc01182 at 1750.995 kb on - strand, within SMc01182 at 1751.054 kb on + strand, within SMc01182 at 1751.142 kb on + strand, within SMc01182 at 1751.142 kb on + strand, within SMc01182 at 1751.143 kb on - strand, within SMc01182 at 1751.201 kb on + strand, within SMc01182 at 1751.214 kb on - strand, within SMc01182 at 1751.220 kb on + strand, within SMc01182 at 1751.220 kb on + strand, within SMc01182 at 1751.220 kb on + strand, within SMc01182 at 1751.220 kb on + strand, within SMc01182 at 1751.220 kb on + strand, within SMc01182 at 1751.221 kb on - strand, within SMc01182 at 1751.221 kb on - strand, within SMc01182 at 1751.221 kb on - strand, within SMc01182 at 1751.221 kb on - strand at 1751.221 kb on - strand, within SMc01182
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,749,668 + SMc01183 0.30 -0.4 1,749,860 - SMc01183 0.57 -1.1 1,750,167 - -0.2 1,750,167 - -1.8 1,750,236 + -2.4 1,750,236 + -0.0 1,750,236 + +0.5 1,750,237 - -0.4 1,750,254 + +0.5 1,750,272 + +0.4 1,750,272 + +1.1 1,750,290 + +0.4 1,750,290 + -0.2 1,750,290 + -1.4 1,750,300 - +0.9 1,750,673 + SMc01182 0.15 +0.8 1,750,673 + SMc01182 0.15 +1.0 1,750,794 + SMc01182 0.27 +0.1 1,750,889 + SMc01182 0.35 +0.4 1,750,994 + SMc01182 0.45 -2.6 1,750,994 + SMc01182 0.45 +1.0 1,750,994 + SMc01182 0.45 -0.5 1,750,994 + SMc01182 0.45 +0.8 1,750,994 + SMc01182 0.45 +0.3 1,750,994 + +0.3 1,750,995 - SMc01182 0.45 +1.6 1,750,995 - SMc01182 0.45 +0.6 1,750,995 - SMc01182 0.45 +0.2 1,750,995 - SMc01182 0.45 -1.3 1,750,995 - SMc01182 0.45 +1.4 1,751,054 + SMc01182 0.51 -0.3 1,751,142 + SMc01182 0.59 -1.3 1,751,142 + SMc01182 0.59 -2.6 1,751,143 - SMc01182 0.59 +0.0 1,751,201 + SMc01182 0.64 -2.2 1,751,214 - SMc01182 0.65 +0.3 1,751,220 + SMc01182 0.66 +0.1 1,751,220 + SMc01182 0.66 -0.3 1,751,220 + SMc01182 0.66 +0.9 1,751,220 + SMc01182 0.66 -0.2 1,751,220 + SMc01182 0.66 -1.4 1,751,221 - SMc01182 0.66 +0.6 1,751,221 - SMc01182 0.66 +0.8 1,751,221 - SMc01182 0.66 +0.2 1,751,221 - +1.9 1,751,221 - SMc01182 0.66 -0.1
Or see this region's nucleotide sequence