Strain Fitness in Sinorhizobium meliloti 1021 around SMc01251

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01183 and SMc01251 are separated by 220 nucleotidesSMc01251 and SMc01182 are separated by 44 nucleotides SMc01183: SMc01183 - LexA repressor, at 1,749,452 to 1,750,168 SMc01183 SMc01251: SMc01251 - tRNA-Cys, at 1,750,389 to 1,750,462 SMc01251 SMc01182: SMc01182 - hypothetical protein, at 1,750,507 to 1,751,586 SMc01182 Position (kb) 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2at 1749.668 kb on + strand, within SMc01183at 1749.860 kb on - strand, within SMc01183at 1750.167 kb on - strandat 1750.167 kb on - strandat 1750.236 kb on + strandat 1750.236 kb on + strandat 1750.236 kb on + strandat 1750.237 kb on - strandat 1750.254 kb on + strandat 1750.272 kb on + strandat 1750.272 kb on + strandat 1750.290 kb on + strandat 1750.290 kb on + strandat 1750.290 kb on + strandat 1750.300 kb on - strandat 1750.673 kb on + strand, within SMc01182at 1750.673 kb on + strand, within SMc01182at 1750.794 kb on + strand, within SMc01182at 1750.889 kb on + strand, within SMc01182at 1750.994 kb on + strand, within SMc01182at 1750.994 kb on + strand, within SMc01182at 1750.994 kb on + strand, within SMc01182at 1750.994 kb on + strand, within SMc01182at 1750.994 kb on + strand, within SMc01182at 1750.994 kb on + strandat 1750.995 kb on - strand, within SMc01182at 1750.995 kb on - strand, within SMc01182at 1750.995 kb on - strand, within SMc01182at 1750.995 kb on - strand, within SMc01182at 1750.995 kb on - strand, within SMc01182at 1751.054 kb on + strand, within SMc01182at 1751.142 kb on + strand, within SMc01182at 1751.142 kb on + strand, within SMc01182at 1751.143 kb on - strand, within SMc01182at 1751.201 kb on + strand, within SMc01182at 1751.214 kb on - strand, within SMc01182at 1751.220 kb on + strand, within SMc01182at 1751.220 kb on + strand, within SMc01182at 1751.220 kb on + strand, within SMc01182at 1751.220 kb on + strand, within SMc01182at 1751.220 kb on + strand, within SMc01182at 1751.221 kb on - strand, within SMc01182at 1751.221 kb on - strand, within SMc01182at 1751.221 kb on - strand, within SMc01182at 1751.221 kb on - strandat 1751.221 kb on - strand, within SMc01182

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,749,668 + SMc01183 0.30 -0.4
1,749,860 - SMc01183 0.57 -1.1
1,750,167 - -0.2
1,750,167 - -1.8
1,750,236 + -2.4
1,750,236 + -0.0
1,750,236 + +0.5
1,750,237 - -0.4
1,750,254 + +0.5
1,750,272 + +0.4
1,750,272 + +1.1
1,750,290 + +0.4
1,750,290 + -0.2
1,750,290 + -1.4
1,750,300 - +0.9
1,750,673 + SMc01182 0.15 +0.8
1,750,673 + SMc01182 0.15 +1.0
1,750,794 + SMc01182 0.27 +0.1
1,750,889 + SMc01182 0.35 +0.4
1,750,994 + SMc01182 0.45 -2.6
1,750,994 + SMc01182 0.45 +1.0
1,750,994 + SMc01182 0.45 -0.5
1,750,994 + SMc01182 0.45 +0.8
1,750,994 + SMc01182 0.45 +0.3
1,750,994 + +0.3
1,750,995 - SMc01182 0.45 +1.6
1,750,995 - SMc01182 0.45 +0.6
1,750,995 - SMc01182 0.45 +0.2
1,750,995 - SMc01182 0.45 -1.3
1,750,995 - SMc01182 0.45 +1.4
1,751,054 + SMc01182 0.51 -0.3
1,751,142 + SMc01182 0.59 -1.3
1,751,142 + SMc01182 0.59 -2.6
1,751,143 - SMc01182 0.59 +0.0
1,751,201 + SMc01182 0.64 -2.2
1,751,214 - SMc01182 0.65 +0.3
1,751,220 + SMc01182 0.66 +0.1
1,751,220 + SMc01182 0.66 -0.3
1,751,220 + SMc01182 0.66 +0.9
1,751,220 + SMc01182 0.66 -0.2
1,751,220 + SMc01182 0.66 -1.4
1,751,221 - SMc01182 0.66 +0.6
1,751,221 - SMc01182 0.66 +0.8
1,751,221 - SMc01182 0.66 +0.2
1,751,221 - +1.9
1,751,221 - SMc01182 0.66 -0.1

Or see this region's nucleotide sequence