Strain Fitness in Sinorhizobium meliloti 1021 around SMc01155

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01156 and SMc01155 are separated by 4 nucleotidesSMc01155 and SMc01154 are separated by 145 nucleotides SMc01156: SMc01156 - ubiquinone biosynthesis protein, at 393,673 to 395,247 SMc01156 SMc01155: SMc01155 - ubiquinone/menaquinone biosynthesis methyltransferase, at 395,252 to 396,064 SMc01155 SMc01154: SMc01154 - formamidopyrimidine-DNA glycosylase, at 396,210 to 397,115 SMc01154 Position (kb) 395 396 397Strain fitness (log2 ratio) -2 -1 0 1 2at 396.128 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.130 kb on - strandat 396.187 kb on + strandat 396.188 kb on - strandat 396.385 kb on - strand, within SMc01154at 396.588 kb on + strand, within SMc01154at 396.588 kb on + strand, within SMc01154at 396.588 kb on + strand, within SMc01154at 396.589 kb on - strand, within SMc01154at 396.589 kb on - strand, within SMc01154at 396.788 kb on + strand, within SMc01154at 396.788 kb on + strand, within SMc01154at 396.789 kb on - strand, within SMc01154at 396.792 kb on + strand, within SMc01154at 397.009 kb on - strand, within SMc01154

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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396,128 - +0.6
396,130 - +1.2
396,130 - +0.5
396,130 - +2.1
396,130 - +1.3
396,130 - +2.1
396,130 - -1.3
396,130 - -0.2
396,187 + +0.4
396,188 - +0.6
396,385 - SMc01154 0.19 -0.7
396,588 + SMc01154 0.42 +0.6
396,588 + SMc01154 0.42 +0.1
396,588 + SMc01154 0.42 +0.4
396,589 - SMc01154 0.42 -0.8
396,589 - SMc01154 0.42 -2.3
396,788 + SMc01154 0.64 +0.0
396,788 + SMc01154 0.64 +0.8
396,789 - SMc01154 0.64 -2.3
396,792 + SMc01154 0.64 +0.3
397,009 - SMc01154 0.88 +1.1

Or see this region's nucleotide sequence