Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00991 and SMc00990 are separated by 106 nucleotides SMc00990 and SMc00994 are separated by 112 nucleotides
SMc00991: SMc00991 - putrescine-binding periplasmic protein, at 942,461 to 943,501
SMc00991
SMc00990: SMc00990 - fosmidomycin resistance antibiotic resistance transmembrane protein, at 943,608 to 944,804
SMc00990
SMc00994: SMc00994 - transcriptional regulator, at 944,917 to 945,732
SMc00994
Position (kb) 943
944
945 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 942.757 kb on + strand, within SMc00991 at 942.757 kb on + strand, within SMc00991 at 942.757 kb on + strand, within SMc00991 at 942.849 kb on + strand, within SMc00991 at 942.850 kb on - strand, within SMc00991 at 942.850 kb on - strand, within SMc00991 at 942.851 kb on + strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.852 kb on - strand, within SMc00991 at 942.853 kb on + strand, within SMc00991 at 942.853 kb on + strand, within SMc00991 at 942.854 kb on - strand, within SMc00991 at 942.854 kb on - strand, within SMc00991 at 942.894 kb on + strand, within SMc00991 at 942.895 kb on - strand, within SMc00991 at 942.901 kb on - strand, within SMc00991 at 942.901 kb on - strand, within SMc00991 at 943.188 kb on + strand, within SMc00991 at 943.188 kb on + strand, within SMc00991 at 943.188 kb on + strand, within SMc00991 at 943.189 kb on - strand, within SMc00991 at 943.189 kb on - strand, within SMc00991 at 943.402 kb on + strand at 943.403 kb on - strand at 943.404 kb on + strand at 943.405 kb on - strand at 943.405 kb on - strand at 943.405 kb on - strand at 943.418 kb on - strand at 943.483 kb on + strand at 943.561 kb on - strand at 943.635 kb on + strand at 943.664 kb on - strand at 943.677 kb on - strand at 943.677 kb on - strand at 943.678 kb on + strand at 943.678 kb on + strand at 944.017 kb on - strand, within SMc00990 at 944.040 kb on + strand, within SMc00990 at 944.040 kb on + strand, within SMc00990 at 944.041 kb on - strand, within SMc00990 at 944.041 kb on - strand, within SMc00990 at 944.080 kb on + strand, within SMc00990 at 944.080 kb on + strand, within SMc00990 at 944.080 kb on + strand, within SMc00990 at 944.081 kb on - strand, within SMc00990 at 944.101 kb on + strand, within SMc00990 at 944.102 kb on - strand, within SMc00990 at 944.102 kb on - strand, within SMc00990 at 944.224 kb on + strand, within SMc00990 at 944.224 kb on + strand, within SMc00990 at 944.224 kb on + strand, within SMc00990 at 944.225 kb on - strand, within SMc00990 at 944.555 kb on - strand, within SMc00990 at 944.625 kb on - strand, within SMc00990 at 944.683 kb on + strand, within SMc00990 at 944.683 kb on + strand, within SMc00990 at 944.723 kb on + strand at 944.723 kb on + strand at 944.723 kb on + strand at 944.723 kb on + strand at 944.724 kb on - strand at 944.856 kb on + strand at 945.028 kb on + strand, within SMc00994 at 945.028 kb on + strand, within SMc00994 at 945.029 kb on - strand, within SMc00994 at 945.111 kb on + strand, within SMc00994 at 945.111 kb on + strand, within SMc00994 at 945.112 kb on - strand, within SMc00994 at 945.112 kb on - strand, within SMc00994 at 945.204 kb on + strand, within SMc00994 at 945.204 kb on + strand, within SMc00994 at 945.204 kb on + strand, within SMc00994 at 945.205 kb on - strand, within SMc00994 at 945.205 kb on - strand, within SMc00994 at 945.217 kb on + strand, within SMc00994 at 945.218 kb on - strand, within SMc00994 at 945.218 kb on - strand, within SMc00994 at 945.395 kb on + strand, within SMc00994 at 945.395 kb on + strand, within SMc00994 at 945.396 kb on - strand, within SMc00994 at 945.709 kb on + strand at 945.710 kb on - strand at 945.761 kb on + strand at 945.762 kb on - strand at 945.762 kb on - strand at 945.802 kb on + strand at 945.802 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 942,757 + SMc00991 0.28 +1.1 942,757 + SMc00991 0.28 -0.0 942,757 + SMc00991 0.28 -1.5 942,849 + SMc00991 0.37 -1.0 942,850 - SMc00991 0.37 -0.3 942,850 - SMc00991 0.37 +0.4 942,851 + SMc00991 0.37 -0.6 942,852 - SMc00991 0.38 -0.5 942,852 - SMc00991 0.38 +0.6 942,852 - SMc00991 0.38 +0.4 942,852 - SMc00991 0.38 -4.1 942,852 - SMc00991 0.38 +1.5 942,852 - SMc00991 0.38 +1.5 942,853 + SMc00991 0.38 +0.6 942,853 + SMc00991 0.38 +0.2 942,854 - SMc00991 0.38 +2.0 942,854 - SMc00991 0.38 -0.1 942,894 + SMc00991 0.42 -0.0 942,895 - SMc00991 0.42 +0.0 942,901 - SMc00991 0.42 -0.8 942,901 - SMc00991 0.42 -0.1 943,188 + SMc00991 0.70 +1.2 943,188 + SMc00991 0.70 -2.7 943,188 + SMc00991 0.70 +0.3 943,189 - SMc00991 0.70 -0.1 943,189 - SMc00991 0.70 +0.4 943,402 + +0.9 943,403 - +1.6 943,404 + -1.0 943,405 - -2.6 943,405 - +0.4 943,405 - +0.6 943,418 - -1.1 943,483 + +0.9 943,561 - +0.0 943,635 + +0.4 943,664 - +0.1 943,677 - -3.4 943,677 - -0.1 943,678 + +1.5 943,678 + +1.0 944,017 - SMc00990 0.34 +0.0 944,040 + SMc00990 0.36 +0.4 944,040 + SMc00990 0.36 -0.6 944,041 - SMc00990 0.36 -1.1 944,041 - SMc00990 0.36 -1.2 944,080 + SMc00990 0.39 -1.1 944,080 + SMc00990 0.39 +0.9 944,080 + SMc00990 0.39 -0.5 944,081 - SMc00990 0.40 -1.6 944,101 + SMc00990 0.41 -1.6 944,102 - SMc00990 0.41 -1.0 944,102 - SMc00990 0.41 -1.1 944,224 + SMc00990 0.51 +0.1 944,224 + SMc00990 0.51 +1.0 944,224 + SMc00990 0.51 -1.0 944,225 - SMc00990 0.52 -0.2 944,555 - SMc00990 0.79 -3.6 944,625 - SMc00990 0.85 -2.4 944,683 + SMc00990 0.90 -1.2 944,683 + SMc00990 0.90 +0.5 944,723 + -0.4 944,723 + +0.2 944,723 + -2.5 944,723 + +0.7 944,724 - -2.4 944,856 + -0.2 945,028 + SMc00994 0.14 -2.4 945,028 + SMc00994 0.14 -0.9 945,029 - SMc00994 0.14 -1.1 945,111 + SMc00994 0.24 -1.6 945,111 + SMc00994 0.24 -2.0 945,112 - SMc00994 0.24 -1.0 945,112 - SMc00994 0.24 +0.5 945,204 + SMc00994 0.35 +0.8 945,204 + SMc00994 0.35 +0.8 945,204 + SMc00994 0.35 +1.4 945,205 - SMc00994 0.35 +2.8 945,205 - SMc00994 0.35 -1.2 945,217 + SMc00994 0.37 -0.4 945,218 - SMc00994 0.37 -2.7 945,218 - SMc00994 0.37 +1.8 945,395 + SMc00994 0.59 -0.2 945,395 + SMc00994 0.59 -3.4 945,396 - SMc00994 0.59 -2.0 945,709 + -2.1 945,710 - +0.9 945,761 + +1.0 945,762 - +0.3 945,762 - +0.2 945,802 + +1.0 945,802 + -2.8
Or see this region's nucleotide sequence