Strain Fitness in Sinorhizobium meliloti 1021 around SMc00563

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00561 and SMc00562 are separated by 321 nucleotidesSMc00562 and SMc00563 overlap by 4 nucleotidesSMc00563 and SMc00564 overlap by 4 nucleotides SMc00561: SMc00561 - replicative DNA helicase, at 1,230,911 to 1,232,410 SMc00561 SMc00562: SMc00562 - transcriptional regulator, at 1,232,732 to 1,233,184 SMc00562 SMc00563: SMc00563 - transporter, at 1,233,181 to 1,234,776 SMc00563 SMc00564: SMc00564 - transporter, at 1,234,773 to 1,235,861 SMc00564 Position (kb) 1233 1234 1235Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1232.429 kb on - strandat 1232.504 kb on + strandat 1232.504 kb on + strandat 1232.505 kb on - strandat 1232.577 kb on + strandat 1232.617 kb on + strandat 1232.618 kb on - strandat 1232.623 kb on + strandat 1232.682 kb on + strandat 1232.686 kb on + strandat 1232.686 kb on + strandat 1232.710 kb on - strandat 1232.729 kb on + strandat 1233.232 kb on + strandat 1233.233 kb on - strandat 1233.361 kb on + strand, within SMc00563at 1233.361 kb on + strand, within SMc00563at 1233.361 kb on + strand, within SMc00563at 1233.361 kb on + strand, within SMc00563at 1233.362 kb on - strand, within SMc00563at 1233.415 kb on + strand, within SMc00563at 1233.416 kb on - strand, within SMc00563at 1233.565 kb on + strand, within SMc00563at 1233.565 kb on + strand, within SMc00563at 1233.566 kb on - strand, within SMc00563at 1233.566 kb on - strand, within SMc00563at 1233.567 kb on + strand, within SMc00563at 1233.568 kb on - strand, within SMc00563at 1233.568 kb on - strand, within SMc00563at 1233.568 kb on - strand, within SMc00563at 1233.748 kb on + strand, within SMc00563at 1233.812 kb on - strand, within SMc00563at 1233.812 kb on - strand, within SMc00563at 1233.871 kb on + strand, within SMc00563at 1233.941 kb on + strand, within SMc00563at 1233.941 kb on + strand, within SMc00563at 1233.980 kb on + strand, within SMc00563at 1233.980 kb on + strand, within SMc00563at 1233.980 kb on + strand, within SMc00563at 1233.980 kb on + strand, within SMc00563at 1233.980 kb on + strand, within SMc00563at 1233.981 kb on - strand, within SMc00563at 1233.981 kb on - strand, within SMc00563at 1233.981 kb on - strand, within SMc00563at 1233.981 kb on - strand, within SMc00563at 1234.099 kb on + strand, within SMc00563at 1234.100 kb on - strand, within SMc00563at 1234.100 kb on - strand, within SMc00563at 1234.237 kb on + strand, within SMc00563at 1234.238 kb on - strand, within SMc00563at 1234.238 kb on - strand, within SMc00563at 1234.239 kb on + strand, within SMc00563at 1234.239 kb on + strand, within SMc00563at 1234.239 kb on + strand, within SMc00563at 1234.239 kb on + strand, within SMc00563at 1234.240 kb on - strand, within SMc00563at 1234.240 kb on - strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.282 kb on + strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.283 kb on - strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.378 kb on + strand, within SMc00563at 1234.682 kb on + strandat 1234.682 kb on + strandat 1234.683 kb on - strandat 1234.757 kb on + strandat 1234.826 kb on + strandat 1234.826 kb on + strandat 1234.827 kb on - strandat 1234.827 kb on - strandat 1234.923 kb on + strand, within SMc00564at 1234.923 kb on + strand, within SMc00564at 1234.996 kb on - strand, within SMc00564at 1235.005 kb on + strand, within SMc00564at 1235.005 kb on + strand, within SMc00564at 1235.005 kb on + strand, within SMc00564at 1235.006 kb on - strand, within SMc00564at 1235.046 kb on + strand, within SMc00564at 1235.493 kb on + strand, within SMc00564at 1235.493 kb on + strand, within SMc00564at 1235.493 kb on + strand, within SMc00564at 1235.494 kb on - strand, within SMc00564at 1235.494 kb on - strand, within SMc00564at 1235.494 kb on - strand, within SMc00564at 1235.494 kb on - strand, within SMc00564at 1235.494 kb on - strand, within SMc00564

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,232,429 - +0.4
1,232,504 + +0.8
1,232,504 + -1.5
1,232,505 - -0.3
1,232,577 + +0.0
1,232,617 + +1.4
1,232,618 - -1.1
1,232,623 + +0.5
1,232,682 + +1.4
1,232,686 + -0.7
1,232,686 + -2.3
1,232,710 - -0.1
1,232,729 + -1.5
1,233,232 + -0.1
1,233,233 - +1.8
1,233,361 + SMc00563 0.11 -1.6
1,233,361 + SMc00563 0.11 +2.3
1,233,361 + SMc00563 0.11 +0.2
1,233,361 + SMc00563 0.11 +1.9
1,233,362 - SMc00563 0.11 +0.2
1,233,415 + SMc00563 0.15 +0.4
1,233,416 - SMc00563 0.15 -3.4
1,233,565 + SMc00563 0.24 -0.7
1,233,565 + SMc00563 0.24 -4.6
1,233,566 - SMc00563 0.24 -3.4
1,233,566 - SMc00563 0.24 +0.2
1,233,567 + SMc00563 0.24 -2.8
1,233,568 - SMc00563 0.24 +0.1
1,233,568 - SMc00563 0.24 -0.2
1,233,568 - SMc00563 0.24 +0.1
1,233,748 + SMc00563 0.36 +0.2
1,233,812 - SMc00563 0.40 -0.7
1,233,812 - SMc00563 0.40 -0.1
1,233,871 + SMc00563 0.43 -3.0
1,233,941 + SMc00563 0.48 +0.3
1,233,941 + SMc00563 0.48 +0.2
1,233,980 + SMc00563 0.50 -1.8
1,233,980 + SMc00563 0.50 -0.4
1,233,980 + SMc00563 0.50 +3.4
1,233,980 + SMc00563 0.50 +0.9
1,233,980 + SMc00563 0.50 -0.4
1,233,981 - SMc00563 0.50 -1.1
1,233,981 - SMc00563 0.50 -3.9
1,233,981 - SMc00563 0.50 -2.3
1,233,981 - SMc00563 0.50 -0.3
1,234,099 + SMc00563 0.58 -0.7
1,234,100 - SMc00563 0.58 -0.6
1,234,100 - SMc00563 0.58 -0.7
1,234,237 + SMc00563 0.66 +0.4
1,234,238 - SMc00563 0.66 -3.0
1,234,238 - SMc00563 0.66 -0.0
1,234,239 + SMc00563 0.66 +0.5
1,234,239 + SMc00563 0.66 +0.2
1,234,239 + SMc00563 0.66 -0.8
1,234,239 + SMc00563 0.66 +0.3
1,234,240 - SMc00563 0.66 -4.2
1,234,240 - SMc00563 0.66 -0.7
1,234,282 + SMc00563 0.69 -2.2
1,234,282 + SMc00563 0.69 -2.6
1,234,282 + SMc00563 0.69 -0.5
1,234,282 + SMc00563 0.69 +0.3
1,234,282 + SMc00563 0.69 -1.0
1,234,282 + SMc00563 0.69 +0.2
1,234,283 - SMc00563 0.69 -1.7
1,234,283 - SMc00563 0.69 -1.8
1,234,283 - SMc00563 0.69 +0.1
1,234,283 - SMc00563 0.69 +1.4
1,234,283 - SMc00563 0.69 +0.9
1,234,283 - SMc00563 0.69 +0.1
1,234,283 - SMc00563 0.69 +1.9
1,234,283 - SMc00563 0.69 -1.5
1,234,378 + SMc00563 0.75 +0.8
1,234,378 + SMc00563 0.75 -0.8
1,234,378 + SMc00563 0.75 +1.0
1,234,378 + SMc00563 0.75 -1.1
1,234,378 + SMc00563 0.75 +0.2
1,234,378 + SMc00563 0.75 -0.4
1,234,682 + -0.6
1,234,682 + +0.5
1,234,683 - -1.5
1,234,757 + +0.9
1,234,826 + -0.8
1,234,826 + +0.1
1,234,827 - +1.9
1,234,827 - -0.2
1,234,923 + SMc00564 0.14 +0.6
1,234,923 + SMc00564 0.14 -2.9
1,234,996 - SMc00564 0.20 -1.0
1,235,005 + SMc00564 0.21 -1.7
1,235,005 + SMc00564 0.21 +0.3
1,235,005 + SMc00564 0.21 -3.1
1,235,006 - SMc00564 0.21 -0.1
1,235,046 + SMc00564 0.25 +0.3
1,235,493 + SMc00564 0.66 -0.6
1,235,493 + SMc00564 0.66 +1.4
1,235,493 + SMc00564 0.66 -0.1
1,235,494 - SMc00564 0.66 +0.5
1,235,494 - SMc00564 0.66 -1.1
1,235,494 - SMc00564 0.66 -0.8
1,235,494 - SMc00564 0.66 -0.2
1,235,494 - SMc00564 0.66 -0.2

Or see this region's nucleotide sequence