Strain Fitness in Sinorhizobium meliloti 1021 around SMa2333

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2331 and SMa2333 are separated by 11 nucleotidesSMa2333 and SMa2335 are separated by 225 nucleotidesSMa2335 and SMa2337 are separated by 271 nucleotides SMa2331: SMa2331 - potassium-transporting ATPase subunit B, at 1,300,360 to 1,302,402 SMa2331 SMa2333: SMa2333 - potassium-transporting ATPase subunit A, at 1,302,414 to 1,304,123 SMa2333 SMa2335: SMa2335 - hypothetical protein, at 1,304,349 to 1,304,552 SMa2335 SMa2337: SMa2337 - RhtX rhizobactin transporter, at 1,304,824 to 1,306,119 SMa2337 Position (kb) 1302 1303 1304 1305Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1301.673 kb on + strand, within SMa2331at 1301.674 kb on - strand, within SMa2331at 1301.928 kb on + strand, within SMa2331at 1301.962 kb on + strand, within SMa2331at 1301.962 kb on + strand, within SMa2331at 1301.962 kb on + strand, within SMa2331at 1301.963 kb on - strand, within SMa2331at 1302.184 kb on + strand, within SMa2331at 1302.185 kb on - strand, within SMa2331at 1302.358 kb on + strandat 1302.540 kb on - strandat 1302.623 kb on - strand, within SMa2333at 1302.662 kb on + strand, within SMa2333at 1302.662 kb on + strand, within SMa2333at 1302.663 kb on - strand, within SMa2333at 1302.663 kb on - strand, within SMa2333at 1302.667 kb on + strand, within SMa2333at 1302.729 kb on - strand, within SMa2333at 1302.729 kb on - strand, within SMa2333at 1302.729 kb on - strand, within SMa2333at 1302.730 kb on + strand, within SMa2333at 1302.730 kb on + strand, within SMa2333at 1302.730 kb on + strand, within SMa2333at 1302.731 kb on - strand, within SMa2333at 1302.731 kb on - strand, within SMa2333at 1302.731 kb on - strand, within SMa2333at 1302.736 kb on + strand, within SMa2333at 1302.737 kb on - strand, within SMa2333at 1302.737 kb on - strand, within SMa2333at 1302.862 kb on + strand, within SMa2333at 1302.920 kb on + strand, within SMa2333at 1303.012 kb on - strand, within SMa2333at 1303.170 kb on + strand, within SMa2333at 1303.171 kb on - strand, within SMa2333at 1303.216 kb on + strand, within SMa2333at 1303.249 kb on + strand, within SMa2333at 1303.249 kb on + strand, within SMa2333at 1303.250 kb on - strand, within SMa2333at 1303.309 kb on + strand, within SMa2333at 1303.310 kb on - strand, within SMa2333at 1303.346 kb on + strand, within SMa2333at 1303.347 kb on - strand, within SMa2333at 1303.355 kb on - strand, within SMa2333at 1303.585 kb on + strand, within SMa2333at 1303.585 kb on + strand, within SMa2333at 1303.585 kb on + strand, within SMa2333at 1303.586 kb on - strand, within SMa2333at 1303.586 kb on - strand, within SMa2333at 1303.586 kb on - strand, within SMa2333at 1303.586 kb on - strand, within SMa2333at 1303.759 kb on + strand, within SMa2333at 1303.760 kb on - strand, within SMa2333at 1303.869 kb on - strand, within SMa2333at 1304.047 kb on + strandat 1304.048 kb on - strandat 1304.255 kb on - strandat 1304.290 kb on + strandat 1304.515 kb on + strand, within SMa2335at 1304.515 kb on + strand, within SMa2335at 1304.515 kb on + strand, within SMa2335at 1304.516 kb on - strand, within SMa2335at 1304.516 kb on - strand, within SMa2335at 1304.526 kb on + strand, within SMa2335at 1304.526 kb on + strand, within SMa2335at 1304.527 kb on - strand, within SMa2335at 1304.527 kb on - strand, within SMa2335at 1304.642 kb on + strandat 1304.642 kb on + strandat 1304.682 kb on + strandat 1304.710 kb on - strandat 1304.717 kb on + strandat 1304.717 kb on + strandat 1304.718 kb on - strandat 1304.948 kb on - strandat 1305.062 kb on + strand, within SMa2337

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,301,673 + SMa2331 0.64 -0.4
1,301,674 - SMa2331 0.64 +0.6
1,301,928 + SMa2331 0.77 -0.6
1,301,962 + SMa2331 0.78 -3.0
1,301,962 + SMa2331 0.78 -1.1
1,301,962 + SMa2331 0.78 -0.7
1,301,963 - SMa2331 0.78 -0.8
1,302,184 + SMa2331 0.89 +0.5
1,302,185 - SMa2331 0.89 +1.1
1,302,358 + -1.0
1,302,540 - -1.4
1,302,623 - SMa2333 0.12 +0.8
1,302,662 + SMa2333 0.15 +0.3
1,302,662 + SMa2333 0.15 +3.4
1,302,663 - SMa2333 0.15 -0.5
1,302,663 - SMa2333 0.15 -2.4
1,302,667 + SMa2333 0.15 -0.3
1,302,729 - SMa2333 0.18 -3.2
1,302,729 - SMa2333 0.18 +0.4
1,302,729 - SMa2333 0.18 -2.7
1,302,730 + SMa2333 0.18 -0.9
1,302,730 + SMa2333 0.18 -1.8
1,302,730 + SMa2333 0.18 -0.6
1,302,731 - SMa2333 0.19 -0.2
1,302,731 - SMa2333 0.19 +0.3
1,302,731 - SMa2333 0.19 -1.5
1,302,736 + SMa2333 0.19 +0.2
1,302,737 - SMa2333 0.19 -1.7
1,302,737 - SMa2333 0.19 +2.4
1,302,862 + SMa2333 0.26 -1.0
1,302,920 + SMa2333 0.30 -1.2
1,303,012 - SMa2333 0.35 -1.9
1,303,170 + SMa2333 0.44 +0.6
1,303,171 - SMa2333 0.44 -2.9
1,303,216 + SMa2333 0.47 +0.8
1,303,249 + SMa2333 0.49 -0.0
1,303,249 + SMa2333 0.49 -2.0
1,303,250 - SMa2333 0.49 -2.6
1,303,309 + SMa2333 0.52 -3.4
1,303,310 - SMa2333 0.52 -1.7
1,303,346 + SMa2333 0.55 -1.0
1,303,347 - SMa2333 0.55 -0.4
1,303,355 - SMa2333 0.55 -0.1
1,303,585 + SMa2333 0.68 -0.3
1,303,585 + SMa2333 0.68 +0.5
1,303,585 + SMa2333 0.68 +1.7
1,303,586 - SMa2333 0.69 +0.2
1,303,586 - SMa2333 0.69 +3.3
1,303,586 - SMa2333 0.69 -1.8
1,303,586 - SMa2333 0.69 -3.3
1,303,759 + SMa2333 0.79 +0.9
1,303,760 - SMa2333 0.79 -2.6
1,303,869 - SMa2333 0.85 -1.4
1,304,047 + -2.1
1,304,048 - +0.6
1,304,255 - -0.3
1,304,290 + +0.8
1,304,515 + SMa2335 0.81 -2.6
1,304,515 + SMa2335 0.81 -0.9
1,304,515 + SMa2335 0.81 -0.6
1,304,516 - SMa2335 0.82 +0.3
1,304,516 - SMa2335 0.82 +3.0
1,304,526 + SMa2335 0.87 +0.3
1,304,526 + SMa2335 0.87 -1.6
1,304,527 - SMa2335 0.87 +0.4
1,304,527 - SMa2335 0.87 -1.1
1,304,642 + +0.7
1,304,642 + -1.4
1,304,682 + -0.5
1,304,710 - +0.8
1,304,717 + -1.2
1,304,717 + +1.1
1,304,718 - +2.1
1,304,948 - -0.2
1,305,062 + SMa2337 0.18 -0.6

Or see this region's nucleotide sequence