Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2245 and SMa2249 are separated by 789 nucleotides SMa2249 and SMa2251 overlap by 4 nucleotides
SMa2245: SMa2245 - hypothetical protein, at 1,257,344 to 1,259,881
SMa2245
SMa2249: SMa2249 - hypothetical protein, at 1,260,671 to 1,261,777
SMa2249
SMa2251: SMa2251 - hypothetical protein, at 1,261,774 to 1,262,337
SMa2251
Position (kb)
1260
1261
1262 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1259.680 kb on + strand at 1259.733 kb on + strand at 1259.753 kb on + strand at 1259.753 kb on + strand at 1259.789 kb on - strand at 1259.877 kb on - strand at 1259.882 kb on + strand at 1259.882 kb on + strand at 1259.882 kb on + strand at 1259.882 kb on + strand at 1259.882 kb on + strand at 1259.882 kb on + strand at 1259.883 kb on - strand at 1259.883 kb on - strand at 1259.883 kb on - strand at 1259.883 kb on - strand at 1259.883 kb on - strand at 1259.885 kb on - strand at 1259.886 kb on + strand at 1259.955 kb on - strand at 1259.994 kb on + strand at 1259.995 kb on - strand at 1260.055 kb on - strand at 1260.207 kb on + strand at 1260.207 kb on + strand at 1260.233 kb on - strand at 1260.362 kb on + strand at 1260.362 kb on + strand at 1260.507 kb on + strand at 1260.508 kb on - strand at 1260.508 kb on - strand at 1260.508 kb on - strand at 1260.532 kb on + strand at 1260.538 kb on + strand at 1260.539 kb on - strand at 1260.539 kb on - strand at 1261.029 kb on + strand, within SMa2249 at 1261.073 kb on + strand, within SMa2249 at 1261.124 kb on + strand, within SMa2249 at 1261.238 kb on - strand, within SMa2249 at 1261.238 kb on - strand, within SMa2249 at 1261.414 kb on + strand, within SMa2249 at 1261.547 kb on + strand, within SMa2249 at 1261.548 kb on - strand, within SMa2249 at 1261.548 kb on - strand, within SMa2249 at 1261.548 kb on - strand, within SMa2249 at 1261.638 kb on + strand, within SMa2249 at 1261.639 kb on - strand, within SMa2249 at 1261.924 kb on + strand, within SMa2251 at 1261.925 kb on - strand, within SMa2251 at 1262.000 kb on + strand, within SMa2251 at 1262.021 kb on - strand, within SMa2251 at 1262.097 kb on + strand, within SMa2251 at 1262.130 kb on + strand, within SMa2251 at 1262.130 kb on + strand, within SMa2251 at 1262.130 kb on + strand, within SMa2251 at 1262.174 kb on + strand, within SMa2251 at 1262.252 kb on - strand, within SMa2251 at 1262.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 1,259,680 + +0.3 1,259,733 + -0.2 1,259,753 + -2.9 1,259,753 + -0.4 1,259,789 - +0.4 1,259,877 - -0.3 1,259,882 + +3.0 1,259,882 + +0.5 1,259,882 + +0.3 1,259,882 + -1.1 1,259,882 + -1.6 1,259,882 + -0.6 1,259,883 - -4.0 1,259,883 - -0.5 1,259,883 - +0.1 1,259,883 - +0.1 1,259,883 - +0.5 1,259,885 - +0.5 1,259,886 + +0.2 1,259,955 - -0.6 1,259,994 + +2.2 1,259,995 - +0.6 1,260,055 - +0.1 1,260,207 + +0.8 1,260,207 + +1.3 1,260,233 - -0.9 1,260,362 + -0.5 1,260,362 + +0.1 1,260,507 + +3.0 1,260,508 - +1.6 1,260,508 - +2.0 1,260,508 - -0.8 1,260,532 + -1.8 1,260,538 + -1.2 1,260,539 - -0.8 1,260,539 - +2.8 1,261,029 + SMa2249 0.32 -0.6 1,261,073 + SMa2249 0.36 -0.8 1,261,124 + SMa2249 0.41 -2.1 1,261,238 - SMa2249 0.51 -2.8 1,261,238 - SMa2249 0.51 -0.5 1,261,414 + SMa2249 0.67 +0.1 1,261,547 + SMa2249 0.79 -0.6 1,261,548 - SMa2249 0.79 -0.1 1,261,548 - SMa2249 0.79 -0.5 1,261,548 - SMa2249 0.79 +2.0 1,261,638 + SMa2249 0.87 -2.2 1,261,639 - SMa2249 0.87 +2.6 1,261,924 + SMa2251 0.27 -2.9 1,261,925 - SMa2251 0.27 +1.2 1,262,000 + SMa2251 0.40 -0.0 1,262,021 - SMa2251 0.44 +0.3 1,262,097 + SMa2251 0.57 +0.4 1,262,130 + SMa2251 0.63 +0.5 1,262,130 + SMa2251 0.63 -0.4 1,262,130 + SMa2251 0.63 +1.0 1,262,174 + SMa2251 0.71 -1.8 1,262,252 - SMa2251 0.85 +1.0 1,262,335 + +1.0
Or see this region's nucleotide sequence