Strain Fitness in Sinorhizobium meliloti 1021 around SMa2249

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2245 and SMa2249 are separated by 789 nucleotidesSMa2249 and SMa2251 overlap by 4 nucleotides SMa2245: SMa2245 - hypothetical protein, at 1,257,344 to 1,259,881 SMa2245 SMa2249: SMa2249 - hypothetical protein, at 1,260,671 to 1,261,777 SMa2249 SMa2251: SMa2251 - hypothetical protein, at 1,261,774 to 1,262,337 SMa2251 Position (kb) 1260 1261 1262Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1259.680 kb on + strandat 1259.733 kb on + strandat 1259.753 kb on + strandat 1259.753 kb on + strandat 1259.789 kb on - strandat 1259.877 kb on - strandat 1259.882 kb on + strandat 1259.882 kb on + strandat 1259.882 kb on + strandat 1259.882 kb on + strandat 1259.882 kb on + strandat 1259.882 kb on + strandat 1259.883 kb on - strandat 1259.883 kb on - strandat 1259.883 kb on - strandat 1259.883 kb on - strandat 1259.883 kb on - strandat 1259.885 kb on - strandat 1259.886 kb on + strandat 1259.955 kb on - strandat 1259.994 kb on + strandat 1259.995 kb on - strandat 1260.055 kb on - strandat 1260.207 kb on + strandat 1260.207 kb on + strandat 1260.233 kb on - strandat 1260.362 kb on + strandat 1260.362 kb on + strandat 1260.507 kb on + strandat 1260.508 kb on - strandat 1260.508 kb on - strandat 1260.508 kb on - strandat 1260.532 kb on + strandat 1260.538 kb on + strandat 1260.539 kb on - strandat 1260.539 kb on - strandat 1261.029 kb on + strand, within SMa2249at 1261.073 kb on + strand, within SMa2249at 1261.124 kb on + strand, within SMa2249at 1261.238 kb on - strand, within SMa2249at 1261.238 kb on - strand, within SMa2249at 1261.414 kb on + strand, within SMa2249at 1261.547 kb on + strand, within SMa2249at 1261.548 kb on - strand, within SMa2249at 1261.548 kb on - strand, within SMa2249at 1261.548 kb on - strand, within SMa2249at 1261.638 kb on + strand, within SMa2249at 1261.639 kb on - strand, within SMa2249at 1261.924 kb on + strand, within SMa2251at 1261.925 kb on - strand, within SMa2251at 1262.000 kb on + strand, within SMa2251at 1262.021 kb on - strand, within SMa2251at 1262.097 kb on + strand, within SMa2251at 1262.130 kb on + strand, within SMa2251at 1262.130 kb on + strand, within SMa2251at 1262.130 kb on + strand, within SMa2251at 1262.174 kb on + strand, within SMa2251at 1262.252 kb on - strand, within SMa2251at 1262.335 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,259,680 + +0.3
1,259,733 + -0.2
1,259,753 + -2.9
1,259,753 + -0.4
1,259,789 - +0.4
1,259,877 - -0.3
1,259,882 + +3.0
1,259,882 + +0.5
1,259,882 + +0.3
1,259,882 + -1.1
1,259,882 + -1.6
1,259,882 + -0.6
1,259,883 - -4.0
1,259,883 - -0.5
1,259,883 - +0.1
1,259,883 - +0.1
1,259,883 - +0.5
1,259,885 - +0.5
1,259,886 + +0.2
1,259,955 - -0.6
1,259,994 + +2.2
1,259,995 - +0.6
1,260,055 - +0.1
1,260,207 + +0.8
1,260,207 + +1.3
1,260,233 - -0.9
1,260,362 + -0.5
1,260,362 + +0.1
1,260,507 + +3.0
1,260,508 - +1.6
1,260,508 - +2.0
1,260,508 - -0.8
1,260,532 + -1.8
1,260,538 + -1.2
1,260,539 - -0.8
1,260,539 - +2.8
1,261,029 + SMa2249 0.32 -0.6
1,261,073 + SMa2249 0.36 -0.8
1,261,124 + SMa2249 0.41 -2.1
1,261,238 - SMa2249 0.51 -2.8
1,261,238 - SMa2249 0.51 -0.5
1,261,414 + SMa2249 0.67 +0.1
1,261,547 + SMa2249 0.79 -0.6
1,261,548 - SMa2249 0.79 -0.1
1,261,548 - SMa2249 0.79 -0.5
1,261,548 - SMa2249 0.79 +2.0
1,261,638 + SMa2249 0.87 -2.2
1,261,639 - SMa2249 0.87 +2.6
1,261,924 + SMa2251 0.27 -2.9
1,261,925 - SMa2251 0.27 +1.2
1,262,000 + SMa2251 0.40 -0.0
1,262,021 - SMa2251 0.44 +0.3
1,262,097 + SMa2251 0.57 +0.4
1,262,130 + SMa2251 0.63 +0.5
1,262,130 + SMa2251 0.63 -0.4
1,262,130 + SMa2251 0.63 +1.0
1,262,174 + SMa2251 0.71 -1.8
1,262,252 - SMa2251 0.85 +1.0
1,262,335 + +1.0

Or see this region's nucleotide sequence