Strain Fitness in Sinorhizobium meliloti 1021 around SMa1881

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1878 and SMa1881 are separated by 526 nucleotidesSMa1881 and SMa1882 are separated by 87 nucleotidesSMa1882 and SMa1884 are separated by 39 nucleotides SMa1878: SMa1878 - transposase, at 1,067,876 to 1,068,031 SMa1878 SMa1881: SMa1881 - hypothetical protein, at 1,068,558 to 1,069,151 SMa1881 SMa1882: SMa1882 - transcriptional activator, at 1,069,239 to 1,069,898 SMa1882 SMa1884: SMa1884 - Cation/multidrug efflux protein, at 1,069,938 to 1,073,048 SMa1884 Position (kb) 1068 1069 1070Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1067.558 kb on + strandat 1067.559 kb on - strandat 1067.559 kb on - strandat 1067.560 kb on + strandat 1067.560 kb on + strandat 1067.654 kb on + strandat 1067.655 kb on - strandat 1067.833 kb on + strandat 1067.833 kb on + strandat 1067.833 kb on + strandat 1067.833 kb on + strandat 1067.833 kb on + strandat 1067.834 kb on - strandat 1067.834 kb on - strandat 1067.834 kb on - strandat 1067.834 kb on - strandat 1067.838 kb on - strandat 1067.991 kb on + strand, within SMa1878at 1067.991 kb on + strand, within SMa1878at 1067.992 kb on - strand, within SMa1878at 1068.482 kb on + strandat 1068.483 kb on - strandat 1068.672 kb on - strand, within SMa1881at 1068.672 kb on - strand, within SMa1881at 1068.672 kb on - strand, within SMa1881at 1068.741 kb on - strand, within SMa1881at 1068.755 kb on + strand, within SMa1881at 1068.789 kb on - strand, within SMa1881at 1068.868 kb on + strand, within SMa1881at 1068.879 kb on + strand, within SMa1881at 1068.879 kb on + strand, within SMa1881at 1068.879 kb on + strand, within SMa1881at 1068.880 kb on - strand, within SMa1881at 1068.880 kb on - strand, within SMa1881at 1068.936 kb on + strand, within SMa1881at 1068.936 kb on + strand, within SMa1881at 1069.085 kb on + strand, within SMa1881at 1069.086 kb on - strand, within SMa1881at 1069.086 kb on - strand, within SMa1881at 1069.149 kb on + strandat 1069.272 kb on + strandat 1069.273 kb on - strandat 1069.363 kb on - strand, within SMa1882at 1069.363 kb on - strand, within SMa1882at 1069.363 kb on - strand, within SMa1882at 1069.365 kb on - strand, within SMa1882at 1069.516 kb on - strand, within SMa1882at 1069.516 kb on - strand, within SMa1882at 1069.776 kb on + strand, within SMa1882at 1069.778 kb on + strand, within SMa1882at 1069.887 kb on - strandat 1070.033 kb on - strandat 1070.093 kb on + strandat 1070.095 kb on + strandat 1070.096 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,067,558 + +0.9
1,067,559 - -0.2
1,067,559 - -0.5
1,067,560 + -0.6
1,067,560 + +0.3
1,067,654 + -1.3
1,067,655 - -0.1
1,067,833 + -0.7
1,067,833 + -0.8
1,067,833 + +0.1
1,067,833 + +0.1
1,067,833 + +1.8
1,067,834 - +0.4
1,067,834 - -0.4
1,067,834 - +0.3
1,067,834 - +0.2
1,067,838 - +0.6
1,067,991 + SMa1878 0.74 +0.4
1,067,991 + SMa1878 0.74 +0.2
1,067,992 - SMa1878 0.74 +0.2
1,068,482 + -0.7
1,068,483 - +0.0
1,068,672 - SMa1881 0.19 +0.2
1,068,672 - SMa1881 0.19 -3.6
1,068,672 - SMa1881 0.19 +1.6
1,068,741 - SMa1881 0.31 +0.7
1,068,755 + SMa1881 0.33 +0.6
1,068,789 - SMa1881 0.39 +0.1
1,068,868 + SMa1881 0.52 -1.8
1,068,879 + SMa1881 0.54 +0.4
1,068,879 + SMa1881 0.54 +1.1
1,068,879 + SMa1881 0.54 +0.0
1,068,880 - SMa1881 0.54 +2.0
1,068,880 - SMa1881 0.54 +0.6
1,068,936 + SMa1881 0.64 +0.8
1,068,936 + SMa1881 0.64 -2.5
1,069,085 + SMa1881 0.89 +0.4
1,069,086 - SMa1881 0.89 -0.0
1,069,086 - SMa1881 0.89 -0.1
1,069,149 + -1.2
1,069,272 + -2.2
1,069,273 - -0.8
1,069,363 - SMa1882 0.19 -1.5
1,069,363 - SMa1882 0.19 -0.7
1,069,363 - SMa1882 0.19 -0.2
1,069,365 - SMa1882 0.19 +0.0
1,069,516 - SMa1882 0.42 -0.1
1,069,516 - SMa1882 0.42 +1.1
1,069,776 + SMa1882 0.81 -0.3
1,069,778 + SMa1882 0.82 -1.0
1,069,887 - +0.1
1,070,033 - -2.0
1,070,093 + +2.1
1,070,095 + -4.1
1,070,096 - -0.1

Or see this region's nucleotide sequence