Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1702 and SMa1704 are separated by 583 nucleotides SMa1704 and SMa1705 are separated by 76 nucleotides
SMa1702: SMa1702 - hypothetical protein, at 959,316 to 959,909
SMa1702
SMa1704: SMa1704 - hypothetical protein, at 960,493 to 961,722
SMa1704
SMa1705: SMa1705 - MUCR family transcriptional regulatory protein IN SYRB 5'region, at 961,799 to 962,215
SMa1705
Position (kb) 960
961
962 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 959.673 kb on + strand, within SMa1702 at 959.674 kb on - strand, within SMa1702 at 959.801 kb on + strand, within SMa1702 at 959.802 kb on - strand, within SMa1702 at 960.003 kb on - strand at 960.068 kb on - strand at 960.068 kb on - strand at 960.070 kb on + strand at 960.071 kb on - strand at 960.157 kb on - strand at 960.385 kb on + strand at 960.386 kb on - strand at 960.457 kb on + strand at 960.457 kb on + strand at 960.457 kb on + strand at 960.458 kb on - strand at 960.557 kb on - strand at 960.558 kb on + strand at 960.558 kb on + strand at 960.559 kb on - strand at 960.559 kb on - strand at 960.740 kb on + strand, within SMa1704 at 960.828 kb on - strand, within SMa1704 at 960.828 kb on - strand, within SMa1704 at 960.828 kb on - strand, within SMa1704 at 960.912 kb on - strand, within SMa1704 at 961.010 kb on - strand, within SMa1704 at 961.140 kb on + strand, within SMa1704 at 961.140 kb on + strand, within SMa1704 at 961.140 kb on + strand, within SMa1704 at 961.141 kb on - strand, within SMa1704 at 961.142 kb on + strand, within SMa1704 at 961.143 kb on - strand, within SMa1704 at 961.484 kb on - strand, within SMa1704 at 961.701 kb on + strand at 961.701 kb on + strand at 961.701 kb on + strand at 961.703 kb on + strand at 961.704 kb on - strand at 961.705 kb on + strand at 961.722 kb on + strand at 961.723 kb on - strand at 961.723 kb on - strand at 961.723 kb on - strand at 961.723 kb on - strand at 961.778 kb on - strand at 961.778 kb on - strand at 961.852 kb on - strand, within SMa1705 at 961.852 kb on - strand, within SMa1705 at 961.860 kb on - strand, within SMa1705 at 961.860 kb on - strand, within SMa1705 at 961.903 kb on + strand, within SMa1705 at 962.079 kb on - strand, within SMa1705 at 962.084 kb on - strand, within SMa1705 at 962.150 kb on + strand, within SMa1705 at 962.151 kb on - strand, within SMa1705 at 962.213 kb on + strand at 962.213 kb on + strand at 962.214 kb on - strand at 962.214 kb on - strand at 962.229 kb on + strand at 962.233 kb on + strand at 962.234 kb on - strand at 962.234 kb on - strand at 962.381 kb on + strand at 962.467 kb on + strand at 962.467 kb on + strand at 962.501 kb on + strand at 962.502 kb on - strand at 962.502 kb on - strand at 962.617 kb on + strand at 962.641 kb on + strand at 962.642 kb on - strand at 962.642 kb on - strand at 962.642 kb on - strand at 962.678 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 959,673 + SMa1702 0.60 -0.3 959,674 - SMa1702 0.60 +0.6 959,801 + SMa1702 0.82 -0.3 959,802 - SMa1702 0.82 -0.1 960,003 - -1.6 960,068 - -0.9 960,068 - -0.1 960,070 + -2.1 960,071 - +0.6 960,157 - -2.2 960,385 + +0.1 960,386 - -0.8 960,457 + +0.7 960,457 + +2.8 960,457 + -1.7 960,458 - +0.4 960,557 - -0.3 960,558 + -2.2 960,558 + +0.3 960,559 - +0.6 960,559 - +0.8 960,740 + SMa1704 0.20 -2.2 960,828 - SMa1704 0.27 -2.8 960,828 - SMa1704 0.27 -2.0 960,828 - SMa1704 0.27 -0.9 960,912 - SMa1704 0.34 +0.2 961,010 - SMa1704 0.42 +0.6 961,140 + SMa1704 0.53 -2.5 961,140 + SMa1704 0.53 -2.4 961,140 + SMa1704 0.53 -1.5 961,141 - SMa1704 0.53 -0.6 961,142 + SMa1704 0.53 +1.8 961,143 - SMa1704 0.53 -1.9 961,484 - SMa1704 0.81 -0.1 961,701 + +0.2 961,701 + -2.0 961,701 + -2.5 961,703 + +2.3 961,704 - +0.5 961,705 + +0.3 961,722 + +0.9 961,723 - -0.1 961,723 - -0.1 961,723 - +1.0 961,723 - -0.4 961,778 - -2.5 961,778 - -1.4 961,852 - SMa1705 0.13 -0.1 961,852 - SMa1705 0.13 +0.6 961,860 - SMa1705 0.15 -0.6 961,860 - SMa1705 0.15 -4.1 961,903 + SMa1705 0.25 +1.2 962,079 - SMa1705 0.67 +2.0 962,084 - SMa1705 0.68 -2.1 962,150 + SMa1705 0.84 +2.0 962,151 - SMa1705 0.84 -0.8 962,213 + +2.2 962,213 + -1.3 962,214 - -0.1 962,214 - +0.2 962,229 + +0.6 962,233 + -0.4 962,234 - -0.8 962,234 - -0.8 962,381 + -1.4 962,467 + +0.5 962,467 + -2.7 962,501 + -0.6 962,502 - +1.8 962,502 - -0.6 962,617 + +0.1 962,641 + +1.9 962,642 - +0.8 962,642 - -2.2 962,642 - -0.1 962,678 + +0.4
Or see this region's nucleotide sequence