Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1670 and SMa1672 are separated by 563 nucleotides SMa1672 and SMa1674 are separated by 96 nucleotides SMa1674 and SMa1675 overlap by 2 nucleotides
SMa1670: SMa1670 - arginine deiminase, at 936,579 to 937,838
SMa1670
SMa1672: SMa1672 - hypothetical protein, at 938,402 to 938,896
SMa1672
SMa1674: SMa1674 - hypothetical protein, at 938,993 to 939,304
SMa1674
SMa1675: SMa1675 - hypothetical protein, at 939,303 to 939,953
SMa1675
Position (kb) 938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 937.420 kb on + strand, within SMa1670 at 937.421 kb on - strand, within SMa1670 at 937.421 kb on - strand, within SMa1670 at 937.460 kb on + strand, within SMa1670 at 937.461 kb on - strand, within SMa1670 at 937.461 kb on - strand, within SMa1670 at 937.579 kb on + strand, within SMa1670 at 937.624 kb on - strand, within SMa1670 at 937.624 kb on - strand, within SMa1670 at 937.710 kb on + strand, within SMa1670 at 937.710 kb on + strand, within SMa1670 at 937.710 kb on + strand, within SMa1670 at 937.711 kb on - strand, within SMa1670 at 937.718 kb on + strand at 937.719 kb on - strand at 937.719 kb on - strand at 937.719 kb on - strand at 937.727 kb on - strand at 937.814 kb on + strand at 938.171 kb on + strand at 938.172 kb on - strand at 938.565 kb on + strand, within SMa1672 at 938.619 kb on + strand, within SMa1672 at 938.620 kb on - strand, within SMa1672 at 938.620 kb on - strand, within SMa1672 at 938.800 kb on + strand, within SMa1672 at 938.800 kb on + strand, within SMa1672 at 938.801 kb on - strand, within SMa1672 at 938.801 kb on - strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.803 kb on - strand, within SMa1672 at 938.995 kb on - strand at 939.016 kb on + strand at 939.017 kb on - strand at 939.081 kb on + strand, within SMa1674 at 939.082 kb on - strand, within SMa1674 at 939.103 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.269 kb on + strand, within SMa1674 at 939.497 kb on - strand, within SMa1675 at 939.498 kb on + strand, within SMa1675 at 939.498 kb on + strand, within SMa1675 at 939.499 kb on - strand, within SMa1675 at 939.499 kb on - strand, within SMa1675 at 939.556 kb on + strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.558 kb on + strand, within SMa1675 at 939.558 kb on + strand, within SMa1675 at 939.559 kb on - strand, within SMa1675 at 939.559 kb on - strand, within SMa1675 at 939.560 kb on + strand, within SMa1675 at 939.561 kb on - strand, within SMa1675 at 939.644 kb on + strand, within SMa1675
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 937,420 + SMa1670 0.67 -1.2 937,421 - SMa1670 0.67 +0.9 937,421 - SMa1670 0.67 -0.3 937,460 + SMa1670 0.70 -2.9 937,461 - SMa1670 0.70 -2.4 937,461 - SMa1670 0.70 +2.8 937,579 + SMa1670 0.79 -3.7 937,624 - SMa1670 0.83 -0.6 937,624 - SMa1670 0.83 -0.0 937,710 + SMa1670 0.90 -0.1 937,710 + SMa1670 0.90 +0.5 937,710 + SMa1670 0.90 -0.9 937,711 - SMa1670 0.90 +0.4 937,718 + -0.1 937,719 - -1.1 937,719 - +0.4 937,719 - -0.2 937,727 - +0.6 937,814 + +1.0 938,171 + -0.1 938,172 - -2.7 938,565 + SMa1672 0.33 +0.7 938,619 + SMa1672 0.44 +1.0 938,620 - SMa1672 0.44 -0.2 938,620 - SMa1672 0.44 +0.5 938,800 + SMa1672 0.80 +1.2 938,800 + SMa1672 0.80 +0.8 938,801 - SMa1672 0.81 +1.5 938,801 - SMa1672 0.81 +1.1 938,802 + SMa1672 0.81 +1.1 938,802 + SMa1672 0.81 -0.2 938,802 + SMa1672 0.81 -1.2 938,802 + SMa1672 0.81 -0.1 938,802 + SMa1672 0.81 +4.7 938,803 - SMa1672 0.81 -0.4 938,995 - -0.1 939,016 + -1.3 939,017 - -0.6 939,081 + SMa1674 0.28 +0.3 939,082 - SMa1674 0.29 -0.2 939,103 - SMa1674 0.35 +1.2 939,267 - SMa1674 0.88 +0.4 939,267 - SMa1674 0.88 +0.5 939,267 - SMa1674 0.88 +1.6 939,267 - SMa1674 0.88 -0.4 939,269 + SMa1674 0.88 -1.0 939,497 - SMa1675 0.30 -0.7 939,498 + SMa1675 0.30 -1.3 939,498 + SMa1675 0.30 -0.8 939,499 - SMa1675 0.30 -0.7 939,499 - SMa1675 0.30 -0.1 939,556 + SMa1675 0.39 +0.4 939,557 - SMa1675 0.39 +0.0 939,557 - SMa1675 0.39 -0.0 939,557 - SMa1675 0.39 +0.6 939,558 + SMa1675 0.39 +1.9 939,558 + SMa1675 0.39 -1.4 939,559 - SMa1675 0.39 +1.4 939,559 - SMa1675 0.39 -0.9 939,560 + SMa1675 0.39 +0.6 939,561 - SMa1675 0.40 +0.2 939,644 + SMa1675 0.52 -1.1
Or see this region's nucleotide sequence