Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa5008 and SMa1365 are separated by 192 nucleotides SMa1365 and SMa1367 are separated by 154 nucleotides SMa1367 and SMa1368 are separated by 7 nucleotides SMa1368 and SMa1370 overlap by 1 nucleotides
SMa5008: SMa5008 - hypothetical protein, at 750,238 to 750,459
SMa5008
SMa1365: SMa1365 - ATP-binding protein, at 750,652 to 751,026
SMa1365
SMa1367: SMa1367 - short chain alcohol dehydrogenase-related dehydrogenase, at 751,181 to 751,939
SMa1367
SMa1368: SMa1368 - hypothetical protein, at 751,947 to 752,672
SMa1368
SMa1370: SMa1370 - ABC transporter ATP-binding protein, at 752,672 to 753,655
SMa1370
Position (kb) 751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 750.220 kb on + strand at 750.240 kb on - strand at 750.280 kb on + strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.303 kb on + strand, within SMa5008 at 750.303 kb on + strand, within SMa5008 at 750.304 kb on - strand, within SMa5008 at 750.320 kb on + strand, within SMa5008 at 750.332 kb on + strand, within SMa5008 at 750.333 kb on - strand, within SMa5008 at 750.333 kb on - strand, within SMa5008 at 750.451 kb on + strand at 750.452 kb on - strand at 750.478 kb on - strand at 750.541 kb on - strand at 750.868 kb on + strand, within SMa1365 at 750.868 kb on + strand, within SMa1365 at 750.953 kb on - strand, within SMa1365 at 751.061 kb on - strand at 751.183 kb on - strand at 751.228 kb on + strand at 751.228 kb on + strand at 751.229 kb on - strand at 751.229 kb on - strand at 751.394 kb on + strand, within SMa1367 at 751.395 kb on - strand, within SMa1367 at 751.814 kb on + strand, within SMa1367 at 752.222 kb on + strand, within SMa1368 at 752.222 kb on + strand, within SMa1368 at 752.388 kb on + strand, within SMa1368 at 752.388 kb on + strand, within SMa1368 at 752.489 kb on + strand, within SMa1368 at 752.896 kb on + strand, within SMa1370 at 752.897 kb on - strand, within SMa1370 at 752.898 kb on + strand, within SMa1370 at 752.899 kb on - strand, within SMa1370 at 752.899 kb on - strand, within SMa1370 at 752.908 kb on + strand, within SMa1370 at 752.908 kb on + strand, within SMa1370 at 752.919 kb on + strand, within SMa1370 at 752.920 kb on - strand, within SMa1370
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 750,220 + -1.3 750,240 - +1.1 750,280 + SMa5008 0.19 -2.7 750,281 - SMa5008 0.19 -2.8 750,281 - SMa5008 0.19 +3.3 750,281 - SMa5008 0.19 +0.6 750,281 - SMa5008 0.19 -2.1 750,303 + SMa5008 0.29 +0.3 750,303 + SMa5008 0.29 -0.9 750,304 - SMa5008 0.30 +0.2 750,320 + SMa5008 0.37 -1.8 750,332 + SMa5008 0.42 -0.3 750,333 - SMa5008 0.43 +2.2 750,333 - SMa5008 0.43 +0.3 750,451 + +1.6 750,452 - +0.9 750,478 - -0.2 750,541 - +0.6 750,868 + SMa1365 0.58 -1.9 750,868 + SMa1365 0.58 +0.1 750,953 - SMa1365 0.80 +0.2 751,061 - -0.0 751,183 - -0.1 751,228 + -0.1 751,228 + -0.8 751,229 - -0.4 751,229 - +0.6 751,394 + SMa1367 0.28 +0.8 751,395 - SMa1367 0.28 -1.7 751,814 + SMa1367 0.83 -3.0 752,222 + SMa1368 0.38 +1.0 752,222 + SMa1368 0.38 -0.7 752,388 + SMa1368 0.61 +0.9 752,388 + SMa1368 0.61 +0.2 752,489 + SMa1368 0.75 +0.1 752,896 + SMa1370 0.23 -0.6 752,897 - SMa1370 0.23 -1.4 752,898 + SMa1370 0.23 -3.6 752,899 - SMa1370 0.23 -1.2 752,899 - SMa1370 0.23 -0.2 752,908 + SMa1370 0.24 +1.2 752,908 + SMa1370 0.24 -1.4 752,919 + SMa1370 0.25 +1.3 752,920 - SMa1370 0.25 -0.5
Or see this region's nucleotide sequence