Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1250 and SMa1252 are separated by 245 nucleotides SMa1252 and SMa1253 are separated by 113 nucleotides
SMa1250: SMa1250 - NirK nitrite reductase, at 683,749 to 684,879
SMa1250
SMa1252: SMa1252 - NnrS family protein, at 685,125 to 686,336
SMa1252
SMa1253: SMa1253 - hypothetical protein, at 686,450 to 686,719
SMa1253
Position (kb) 685
686
687 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 684.145 kb on + strand, within SMa1250 at 684.146 kb on - strand, within SMa1250 at 684.185 kb on + strand, within SMa1250 at 684.186 kb on - strand, within SMa1250 at 684.221 kb on + strand, within SMa1250 at 684.221 kb on + strand, within SMa1250 at 684.222 kb on - strand, within SMa1250 at 684.222 kb on - strand, within SMa1250 at 684.222 kb on - strand, within SMa1250 at 684.222 kb on - strand, within SMa1250 at 684.242 kb on + strand, within SMa1250 at 684.242 kb on + strand, within SMa1250 at 684.242 kb on + strand, within SMa1250 at 684.243 kb on - strand, within SMa1250 at 684.243 kb on - strand, within SMa1250 at 684.243 kb on - strand, within SMa1250 at 684.245 kb on + strand, within SMa1250 at 684.245 kb on + strand, within SMa1250 at 684.246 kb on - strand, within SMa1250 at 684.246 kb on - strand, within SMa1250 at 684.246 kb on - strand, within SMa1250 at 684.257 kb on + strand, within SMa1250 at 684.258 kb on - strand, within SMa1250 at 684.261 kb on + strand, within SMa1250 at 684.262 kb on - strand, within SMa1250 at 684.262 kb on - strand, within SMa1250 at 684.372 kb on - strand, within SMa1250 at 684.533 kb on + strand, within SMa1250 at 684.533 kb on + strand, within SMa1250 at 684.534 kb on - strand, within SMa1250 at 684.688 kb on - strand, within SMa1250 at 684.931 kb on + strand at 684.931 kb on + strand at 684.932 kb on - strand at 684.932 kb on - strand at 684.932 kb on - strand at 685.021 kb on + strand at 685.082 kb on + strand at 685.083 kb on - strand at 685.158 kb on + strand at 685.253 kb on + strand, within SMa1252 at 685.305 kb on + strand, within SMa1252 at 685.306 kb on - strand, within SMa1252 at 685.609 kb on + strand, within SMa1252 at 685.610 kb on - strand, within SMa1252 at 685.698 kb on + strand, within SMa1252 at 685.698 kb on + strand, within SMa1252 at 685.794 kb on + strand, within SMa1252 at 685.794 kb on + strand, within SMa1252 at 685.795 kb on - strand, within SMa1252 at 685.969 kb on + strand, within SMa1252 at 685.983 kb on + strand, within SMa1252 at 686.169 kb on + strand, within SMa1252 at 686.241 kb on + strand at 686.242 kb on - strand at 686.242 kb on - strand at 686.295 kb on + strand at 686.334 kb on + strand at 686.334 kb on + strand at 686.394 kb on - strand at 686.469 kb on + strand at 686.469 kb on + strand at 686.470 kb on - strand at 686.470 kb on - strand at 686.470 kb on - strand at 686.470 kb on - strand at 686.578 kb on - strand, within SMa1253 at 686.704 kb on - strand at 686.732 kb on + strand at 686.768 kb on - strand at 686.941 kb on - strand at 687.043 kb on - strand at 687.043 kb on - strand at 687.077 kb on + strand at 687.078 kb on - strand at 687.111 kb on + strand at 687.111 kb on + strand at 687.112 kb on - strand at 687.174 kb on + strand at 687.175 kb on - strand at 687.304 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 684,145 + SMa1250 0.35 -0.9 684,146 - SMa1250 0.35 -0.9 684,185 + SMa1250 0.39 -2.3 684,186 - SMa1250 0.39 +0.1 684,221 + SMa1250 0.42 -0.1 684,221 + SMa1250 0.42 -2.4 684,222 - SMa1250 0.42 +4.7 684,222 - SMa1250 0.42 -1.9 684,222 - SMa1250 0.42 +0.7 684,222 - SMa1250 0.42 -0.7 684,242 + SMa1250 0.44 +0.8 684,242 + SMa1250 0.44 -1.7 684,242 + SMa1250 0.44 +1.4 684,243 - SMa1250 0.44 +4.2 684,243 - SMa1250 0.44 +1.5 684,243 - SMa1250 0.44 +0.4 684,245 + SMa1250 0.44 -0.6 684,245 + SMa1250 0.44 -2.8 684,246 - SMa1250 0.44 +0.0 684,246 - SMa1250 0.44 -0.8 684,246 - SMa1250 0.44 -0.7 684,257 + SMa1250 0.45 +0.0 684,258 - SMa1250 0.45 +0.6 684,261 + SMa1250 0.45 -0.4 684,262 - SMa1250 0.45 -0.8 684,262 - SMa1250 0.45 +0.2 684,372 - SMa1250 0.55 -0.1 684,533 + SMa1250 0.69 -2.1 684,533 + SMa1250 0.69 -0.0 684,534 - SMa1250 0.69 +2.4 684,688 - SMa1250 0.83 +1.8 684,931 + -1.0 684,931 + -1.3 684,932 - +0.0 684,932 - +2.1 684,932 - +1.4 685,021 + +0.7 685,082 + +0.3 685,083 - -1.0 685,158 + +0.5 685,253 + SMa1252 0.11 -1.2 685,305 + SMa1252 0.15 +0.6 685,306 - SMa1252 0.15 -0.1 685,609 + SMa1252 0.40 -3.6 685,610 - SMa1252 0.40 -0.8 685,698 + SMa1252 0.47 +1.6 685,698 + SMa1252 0.47 -2.4 685,794 + SMa1252 0.55 -0.6 685,794 + SMa1252 0.55 -1.8 685,795 - SMa1252 0.55 -0.0 685,969 + SMa1252 0.70 -0.4 685,983 + SMa1252 0.71 +0.7 686,169 + SMa1252 0.86 -0.8 686,241 + -1.8 686,242 - +1.8 686,242 - +0.7 686,295 + -2.0 686,334 + -4.5 686,334 + -0.2 686,394 - +1.0 686,469 + -1.1 686,469 + -1.1 686,470 - -2.2 686,470 - +0.5 686,470 - +0.0 686,470 - +1.8 686,578 - SMa1253 0.47 -3.5 686,704 - -2.5 686,732 + +1.1 686,768 - +0.5 686,941 - -3.4 687,043 - +2.8 687,043 - -0.5 687,077 + -2.4 687,078 - +0.9 687,111 + +0.1 687,111 + -4.7 687,112 - -0.1 687,174 + +0.7 687,175 - -1.4 687,304 + +0.5
Or see this region's nucleotide sequence