Strain Fitness in Sinorhizobium meliloti 1021 around SMa1214

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1213 and SMa1214 are separated by 3 nucleotidesSMa1214 and SMa1216 are separated by 12 nucleotidesSMa1216 and SMa1220 are separated by 13 nucleotides SMa1213: SMa1213 - FixP1 di-heme cytochrome c, at 667,360 to 668,229 SMa1213 SMa1214: SMa1214 - FixQ1 nitrogen fixation protein, at 668,233 to 668,385 SMa1214 SMa1216: SMa1216 - cbb3-type cytochrome c oxidase subunit II, at 668,398 to 669,129 SMa1216 SMa1220: SMa1220 - cbb3-type cytochrome c oxidase subunit I, at 669,143 to 670,762 SMa1220 Position (kb) 668 669Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 667.361 kb on + strandat 667.653 kb on - strand, within SMa1213at 667.653 kb on - strand, within SMa1213at 667.758 kb on + strand, within SMa1213at 667.767 kb on - strand, within SMa1213at 667.767 kb on - strand, within SMa1213at 667.767 kb on - strand, within SMa1213at 668.085 kb on - strand, within SMa1213at 668.112 kb on - strandat 668.120 kb on + strand, within SMa1213at 668.146 kb on - strandat 668.375 kb on + strandat 668.376 kb on - strandat 668.376 kb on - strandat 668.423 kb on + strandat 668.621 kb on + strand, within SMa1216at 668.621 kb on + strand, within SMa1216at 668.702 kb on + strand, within SMa1216at 668.703 kb on - strand, within SMa1216at 668.703 kb on - strand, within SMa1216at 668.774 kb on + strand, within SMa1216at 668.840 kb on + strand, within SMa1216at 668.840 kb on + strand, within SMa1216at 668.840 kb on + strand, within SMa1216at 668.840 kb on + strand, within SMa1216at 668.841 kb on - strand, within SMa1216at 668.865 kb on - strand, within SMa1216at 668.924 kb on + strand, within SMa1216at 668.925 kb on - strand, within SMa1216at 668.925 kb on - strand, within SMa1216at 668.925 kb on - strand, within SMa1216at 668.942 kb on + strand, within SMa1216at 668.942 kb on + strand, within SMa1216at 668.943 kb on - strand, within SMa1216at 668.943 kb on - strand, within SMa1216at 668.975 kb on + strand, within SMa1216at 668.975 kb on + strand, within SMa1216at 668.975 kb on + strand, within SMa1216at 668.976 kb on - strand, within SMa1216at 669.017 kb on + strand, within SMa1216at 669.073 kb on + strandat 669.074 kb on - strandat 669.135 kb on - strandat 669.135 kb on - strandat 669.135 kb on - strandat 669.144 kb on + strandat 669.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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667,361 + +0.1
667,653 - SMa1213 0.34 +1.1
667,653 - SMa1213 0.34 -1.2
667,758 + SMa1213 0.46 -1.9
667,767 - SMa1213 0.47 -0.7
667,767 - SMa1213 0.47 +3.5
667,767 - SMa1213 0.47 -1.3
668,085 - SMa1213 0.83 +0.7
668,112 - -0.8
668,120 + SMa1213 0.87 -1.6
668,146 - +0.5
668,375 + +0.4
668,376 - -1.0
668,376 - -0.5
668,423 + +0.2
668,621 + SMa1216 0.30 -3.7
668,621 + SMa1216 0.30 +0.4
668,702 + SMa1216 0.42 +0.4
668,703 - SMa1216 0.42 -1.0
668,703 - SMa1216 0.42 -0.1
668,774 + SMa1216 0.51 +1.4
668,840 + SMa1216 0.60 +0.9
668,840 + SMa1216 0.60 +0.2
668,840 + SMa1216 0.60 +1.4
668,840 + SMa1216 0.60 -0.0
668,841 - SMa1216 0.61 +1.8
668,865 - SMa1216 0.64 +0.4
668,924 + SMa1216 0.72 -0.2
668,925 - SMa1216 0.72 -2.3
668,925 - SMa1216 0.72 -1.6
668,925 - SMa1216 0.72 -0.2
668,942 + SMa1216 0.74 -1.2
668,942 + SMa1216 0.74 -2.8
668,943 - SMa1216 0.74 +1.0
668,943 - SMa1216 0.74 -0.4
668,975 + SMa1216 0.79 +3.4
668,975 + SMa1216 0.79 +0.1
668,975 + SMa1216 0.79 +0.1
668,976 - SMa1216 0.79 +0.7
669,017 + SMa1216 0.85 -1.2
669,073 + -0.2
669,074 - +1.8
669,135 - -2.3
669,135 - -0.2
669,135 - +0.1
669,144 + -0.7
669,286 - -0.5

Or see this region's nucleotide sequence