Strain Fitness in Sinorhizobium meliloti 1021 around SMa0917

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0914 and SMa0917 are separated by 136 nucleotidesSMa0917 and SMa5006 are separated by 566 nucleotides SMa0914: SMa0914 - hypothetical protein, at 508,807 to 509,748 SMa0914 SMa0917: SMa0917 - hypothetical protein, at 509,885 to 510,211 SMa0917 SMa5006: SMa5006 - hypothetical protein, at 510,778 to 511,137 SMa5006 Position (kb) 509 510 511Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 508.895 kb on - strandat 509.310 kb on + strand, within SMa0914at 509.310 kb on + strand, within SMa0914at 509.481 kb on + strand, within SMa0914at 509.481 kb on + strand, within SMa0914at 509.746 kb on + strandat 509.747 kb on - strandat 509.822 kb on + strandat 509.823 kb on - strandat 509.829 kb on - strandat 509.833 kb on - strandat 509.899 kb on + strandat 509.900 kb on - strandat 509.990 kb on + strand, within SMa0917at 509.996 kb on + strand, within SMa0917at 509.997 kb on - strand, within SMa0917at 509.997 kb on - strand, within SMa0917at 509.997 kb on - strand, within SMa0917at 510.143 kb on - strand, within SMa0917at 510.227 kb on + strandat 510.233 kb on + strandat 510.234 kb on - strandat 510.257 kb on + strandat 510.258 kb on - strandat 510.284 kb on - strandat 510.305 kb on + strandat 510.305 kb on + strandat 510.609 kb on + strandat 510.609 kb on + strandat 510.610 kb on - strandat 510.610 kb on - strandat 510.912 kb on + strand, within SMa5006at 510.914 kb on + strand, within SMa5006at 510.914 kb on + strand, within SMa5006at 510.914 kb on + strand, within SMa5006at 510.914 kb on + strand, within SMa5006at 510.914 kb on + strand, within SMa5006at 510.914 kb on + strand, within SMa5006at 510.915 kb on - strand, within SMa5006at 510.915 kb on - strand, within SMa5006at 510.964 kb on - strand, within SMa5006at 510.966 kb on + strand, within SMa5006at 510.966 kb on + strand, within SMa5006at 510.967 kb on - strand, within SMa5006at 510.990 kb on + strand, within SMa5006at 510.991 kb on - strand, within SMa5006at 511.007 kb on - strand, within SMa5006at 511.093 kb on + strand, within SMa5006

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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508,895 - -1.0
509,310 + SMa0914 0.53 +1.4
509,310 + SMa0914 0.53 +0.0
509,481 + SMa0914 0.72 +0.8
509,481 + SMa0914 0.72 +0.9
509,746 + -0.8
509,747 - -1.2
509,822 + +0.2
509,823 - -1.4
509,829 - -0.1
509,833 - -2.7
509,899 + -0.9
509,900 - -0.3
509,990 + SMa0917 0.32 +0.7
509,996 + SMa0917 0.34 -0.1
509,997 - SMa0917 0.34 -2.8
509,997 - SMa0917 0.34 -2.1
509,997 - SMa0917 0.34 +0.8
510,143 - SMa0917 0.79 -0.7
510,227 + +0.5
510,233 + -1.8
510,234 - -1.2
510,257 + -1.7
510,258 - +1.0
510,284 - -0.5
510,305 + +0.3
510,305 + -0.0
510,609 + +0.4
510,609 + -2.5
510,610 - +0.8
510,610 - -3.6
510,912 + SMa5006 0.37 +1.1
510,914 + SMa5006 0.38 +0.7
510,914 + SMa5006 0.38 -0.7
510,914 + SMa5006 0.38 +0.2
510,914 + SMa5006 0.38 -1.2
510,914 + SMa5006 0.38 -0.7
510,914 + SMa5006 0.38 +0.6
510,915 - SMa5006 0.38 -4.1
510,915 - SMa5006 0.38 +2.3
510,964 - SMa5006 0.52 -1.5
510,966 + SMa5006 0.52 +0.3
510,966 + SMa5006 0.52 -0.3
510,967 - SMa5006 0.53 +1.0
510,990 + SMa5006 0.59 -2.3
510,991 - SMa5006 0.59 -0.2
511,007 - SMa5006 0.64 +1.7
511,093 + SMa5006 0.88 -0.4

Or see this region's nucleotide sequence