Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa5005 and SMa0887 overlap by 135 nucleotides SMa0887 and SMa0888 are separated by 61 nucleotides SMa0888 and SMa0890 overlap by 47 nucleotides
SMa0886: SMa0886 - hypothetical protein, at 493,801 to 494,535
SMa0886
SMa5005: SMa5005 - hypothetical protein, at 494,139 to 494,702
SMa5005
SMa0887: SMa0887 - hypothetical protein, at 494,568 to 495,134
SMa0887
SMa0888: SMa0888 - hypothetical protein, at 495,196 to 496,014
SMa0888
SMa0890: SMa0890 - hypothetical protein, at 495,968 to 497,392
SMa0890
Position (kb) 495
496
497 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 494.300 kb on + strand at 494.300 kb on + strand at 494.301 kb on - strand at 494.301 kb on - strand at 494.376 kb on + strand at 494.494 kb on + strand at 494.495 kb on - strand at 494.495 kb on - strand at 494.832 kb on + strand, within SMa0887 at 494.832 kb on + strand, within SMa0887 at 494.832 kb on + strand, within SMa0887 at 494.833 kb on - strand, within SMa0887 at 495.152 kb on - strand at 495.152 kb on - strand at 495.293 kb on + strand, within SMa0888 at 495.436 kb on - strand, within SMa0888 at 495.538 kb on + strand, within SMa0888 at 495.538 kb on + strand, within SMa0888 at 495.538 kb on + strand, within SMa0888 at 495.538 kb on + strand, within SMa0888 at 495.539 kb on - strand, within SMa0888 at 495.540 kb on + strand, within SMa0888 at 495.540 kb on + strand, within SMa0888 at 495.891 kb on + strand, within SMa0888 at 495.891 kb on + strand, within SMa0888 at 495.891 kb on + strand, within SMa0888 at 495.892 kb on - strand, within SMa0888 at 495.892 kb on - strand, within SMa0888 at 495.892 kb on - strand, within SMa0888 at 495.892 kb on - strand, within SMa0888 at 496.161 kb on - strand, within SMa0890 at 496.161 kb on - strand, within SMa0890 at 496.313 kb on - strand, within SMa0890 at 496.465 kb on + strand, within SMa0890 at 496.465 kb on + strand, within SMa0890 at 496.561 kb on + strand, within SMa0890 at 496.561 kb on + strand, within SMa0890 at 496.575 kb on + strand, within SMa0890 at 496.576 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.751 kb on - strand, within SMa0890 at 496.996 kb on - strand, within SMa0890
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 494,300 + -1.3 494,300 + +1.7 494,301 - -0.8 494,301 - -1.0 494,376 + +0.9 494,494 + -0.8 494,495 - +1.5 494,495 - -0.3 494,832 + SMa0887 0.47 -0.7 494,832 + SMa0887 0.47 +1.1 494,832 + SMa0887 0.47 +2.1 494,833 - SMa0887 0.47 +0.6 495,152 - -0.9 495,152 - +0.2 495,293 + SMa0888 0.12 -0.5 495,436 - SMa0888 0.29 -3.3 495,538 + SMa0888 0.42 +0.3 495,538 + SMa0888 0.42 -2.3 495,538 + SMa0888 0.42 +0.1 495,538 + SMa0888 0.42 +1.9 495,539 - SMa0888 0.42 +0.2 495,540 + SMa0888 0.42 +1.0 495,540 + SMa0888 0.42 -2.1 495,891 + SMa0888 0.85 -1.5 495,891 + SMa0888 0.85 -3.8 495,891 + SMa0888 0.85 +0.1 495,892 - SMa0888 0.85 +0.4 495,892 - SMa0888 0.85 +1.1 495,892 - SMa0888 0.85 -0.4 495,892 - SMa0888 0.85 -2.8 496,161 - SMa0890 0.14 +0.7 496,161 - SMa0890 0.14 +0.1 496,313 - SMa0890 0.24 -1.2 496,465 + SMa0890 0.35 -0.6 496,465 + SMa0890 0.35 +0.3 496,561 + SMa0890 0.42 +0.1 496,561 + SMa0890 0.42 -1.6 496,575 + SMa0890 0.43 +0.0 496,576 - SMa0890 0.43 -2.2 496,659 - SMa0890 0.48 -1.1 496,659 - SMa0890 0.48 -0.5 496,659 - SMa0890 0.48 +2.9 496,751 - SMa0890 0.55 +0.4 496,996 - SMa0890 0.72 +0.2
Or see this region's nucleotide sequence