Strain Fitness in Sinorhizobium meliloti 1021 around SMa0875

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0873 and SMa0874 are separated by 87 nucleotidesSMa0874 and SMa0875 are separated by 6 nucleotidesSMa0875 and SMa0876 are separated by 3 nucleotides SMa0873: SMa0873 - nitrogenase molybdenum-cofactor biosynthesis protein NifN, at 483,756 to 485,081 SMa0873 SMa0874: SMa0874 - NodN dehydratase, at 485,169 to 485,654 SMa0874 SMa0875: SMa0875 - NolG efflux transporter, at 485,661 to 488,858 SMa0875 SMa0876: SMa0876 - NolF secretion protein, at 488,862 to 489,965 SMa0876 Position (kb) 485 486 487 488 489Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 484.728 kb on + strand, within SMa0873at 484.740 kb on - strand, within SMa0873at 484.828 kb on + strand, within SMa0873at 484.936 kb on + strand, within SMa0873at 485.283 kb on + strand, within SMa0874at 485.287 kb on - strand, within SMa0874at 485.302 kb on - strand, within SMa0874at 485.302 kb on - strand, within SMa0874at 485.520 kb on + strand, within SMa0874at 485.521 kb on - strand, within SMa0874at 485.666 kb on + strandat 485.785 kb on - strandat 485.809 kb on + strandat 485.810 kb on - strandat 485.810 kb on - strandat 485.856 kb on + strandat 486.116 kb on + strand, within SMa0875at 486.116 kb on + strand, within SMa0875at 486.116 kb on + strand, within SMa0875at 486.117 kb on - strand, within SMa0875at 486.117 kb on - strand, within SMa0875at 486.117 kb on - strand, within SMa0875at 486.134 kb on + strand, within SMa0875at 486.236 kb on - strand, within SMa0875at 486.525 kb on - strand, within SMa0875at 486.637 kb on - strand, within SMa0875at 486.637 kb on - strand, within SMa0875at 487.069 kb on + strand, within SMa0875at 487.069 kb on + strand, within SMa0875at 487.120 kb on + strand, within SMa0875at 487.120 kb on + strand, within SMa0875at 487.121 kb on - strand, within SMa0875at 487.240 kb on - strand, within SMa0875at 487.248 kb on - strand, within SMa0875at 487.422 kb on - strand, within SMa0875at 487.458 kb on + strand, within SMa0875at 487.618 kb on - strand, within SMa0875at 487.618 kb on - strand, within SMa0875at 487.641 kb on + strand, within SMa0875at 487.766 kb on + strand, within SMa0875at 488.039 kb on - strand, within SMa0875at 488.039 kb on - strand, within SMa0875at 488.201 kb on + strand, within SMa0875at 488.201 kb on + strand, within SMa0875at 488.272 kb on + strand, within SMa0875at 488.272 kb on + strand, within SMa0875at 488.357 kb on + strand, within SMa0875at 488.357 kb on + strand, within SMa0875at 488.358 kb on - strand, within SMa0875at 488.358 kb on - strand, within SMa0875at 488.358 kb on - strand, within SMa0875at 488.605 kb on + strandat 488.707 kb on + strandat 488.707 kb on + strandat 488.708 kb on - strandat 488.708 kb on - strandat 488.774 kb on - strandat 488.816 kb on + strandat 488.843 kb on + strandat 488.844 kb on - strandat 489.105 kb on + strand, within SMa0876at 489.106 kb on - strand, within SMa0876at 489.252 kb on + strand, within SMa0876at 489.264 kb on + strand, within SMa0876at 489.483 kb on + strand, within SMa0876at 489.484 kb on - strand, within SMa0876at 489.718 kb on - strand, within SMa0876at 489.718 kb on - strand, within SMa0876at 489.755 kb on + strand, within SMa0876at 489.755 kb on + strandat 489.755 kb on + strand, within SMa0876at 489.756 kb on - strand, within SMa0876at 489.756 kb on - strand, within SMa0876at 489.774 kb on + strand, within SMa0876at 489.786 kb on + strand, within SMa0876at 489.788 kb on + strand, within SMa0876at 489.789 kb on - strand, within SMa0876at 489.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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484,728 + SMa0873 0.73 -0.7
484,740 - SMa0873 0.74 -1.2
484,828 + SMa0873 0.81 -0.7
484,936 + SMa0873 0.89 +1.4
485,283 + SMa0874 0.23 +1.1
485,287 - SMa0874 0.24 -3.1
485,302 - SMa0874 0.27 -4.4
485,302 - SMa0874 0.27 -0.1
485,520 + SMa0874 0.72 +1.9
485,521 - SMa0874 0.72 -0.7
485,666 + -0.6
485,785 - +0.9
485,809 + -0.4
485,810 - -0.1
485,810 - -0.0
485,856 + +2.0
486,116 + SMa0875 0.14 +0.5
486,116 + SMa0875 0.14 +2.4
486,116 + SMa0875 0.14 -0.1
486,117 - SMa0875 0.14 -2.7
486,117 - SMa0875 0.14 -1.7
486,117 - SMa0875 0.14 +0.5
486,134 + SMa0875 0.15 -1.4
486,236 - SMa0875 0.18 +1.4
486,525 - SMa0875 0.27 +0.7
486,637 - SMa0875 0.31 +0.2
486,637 - SMa0875 0.31 +0.0
487,069 + SMa0875 0.44 -4.7
487,069 + SMa0875 0.44 -0.2
487,120 + SMa0875 0.46 +0.4
487,120 + SMa0875 0.46 -2.7
487,121 - SMa0875 0.46 +0.8
487,240 - SMa0875 0.49 -0.1
487,248 - SMa0875 0.50 +1.9
487,422 - SMa0875 0.55 -0.3
487,458 + SMa0875 0.56 -0.1
487,618 - SMa0875 0.61 +0.6
487,618 - SMa0875 0.61 -1.4
487,641 + SMa0875 0.62 -2.6
487,766 + SMa0875 0.66 -1.9
488,039 - SMa0875 0.74 -0.0
488,039 - SMa0875 0.74 +0.6
488,201 + SMa0875 0.79 -0.2
488,201 + SMa0875 0.79 +2.6
488,272 + SMa0875 0.82 -0.8
488,272 + SMa0875 0.82 +1.3
488,357 + SMa0875 0.84 +0.5
488,357 + SMa0875 0.84 +0.8
488,358 - SMa0875 0.84 -0.4
488,358 - SMa0875 0.84 -1.5
488,358 - SMa0875 0.84 +0.9
488,605 + -1.0
488,707 + +0.1
488,707 + -2.7
488,708 - -4.0
488,708 - -0.5
488,774 - -2.1
488,816 + -2.6
488,843 + -2.5
488,844 - -1.6
489,105 + SMa0876 0.22 +1.4
489,106 - SMa0876 0.22 -0.2
489,252 + SMa0876 0.35 -0.7
489,264 + SMa0876 0.36 +1.0
489,483 + SMa0876 0.56 -2.0
489,484 - SMa0876 0.56 -0.5
489,718 - SMa0876 0.78 +0.9
489,718 - SMa0876 0.78 +0.0
489,755 + SMa0876 0.81 +0.2
489,755 + +1.9
489,755 + SMa0876 0.81 -1.6
489,756 - SMa0876 0.81 -4.1
489,756 - SMa0876 0.81 +1.6
489,774 + SMa0876 0.83 -1.4
489,786 + SMa0876 0.84 -1.3
489,788 + SMa0876 0.84 -0.5
489,789 - SMa0876 0.84 -0.3
489,858 - -1.5

Or see this region's nucleotide sequence