Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0750 and SMa0751 are separated by 147 nucleotides SMa0751 and SMa0752 are separated by 4 nucleotides
SMa0750: SMa0750 - LysR family transcriptional regulator, at 403,178 to 404,056
SMa0750
SMa0751: SMa0751 - Ring-hydroxylating dioxygenase, at 404,204 to 405,442
SMa0751
SMa0752: SMa0752 - dioxygenase reductase subunit, at 405,447 to 406,508
SMa0752
Position (kb) 404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 403.383 kb on + strand, within SMa0750 at 403.383 kb on + strand, within SMa0750 at 403.384 kb on - strand, within SMa0750 at 403.384 kb on - strand, within SMa0750 at 403.395 kb on + strand, within SMa0750 at 403.395 kb on + strand, within SMa0750 at 403.587 kb on + strand, within SMa0750 at 403.730 kb on + strand, within SMa0750 at 403.730 kb on + strand, within SMa0750 at 404.070 kb on + strand at 404.071 kb on - strand at 404.071 kb on - strand at 404.071 kb on - strand at 404.071 kb on - strand at 404.092 kb on + strand at 404.165 kb on + strand at 404.279 kb on + strand at 404.279 kb on + strand at 404.280 kb on - strand at 404.280 kb on - strand at 404.282 kb on - strand at 404.298 kb on - strand at 404.324 kb on + strand at 404.325 kb on - strand at 404.325 kb on - strand at 404.339 kb on + strand, within SMa0751 at 404.340 kb on - strand, within SMa0751 at 404.374 kb on + strand, within SMa0751 at 404.378 kb on + strand, within SMa0751 at 404.379 kb on - strand, within SMa0751 at 404.379 kb on - strand, within SMa0751 at 404.388 kb on + strand, within SMa0751 at 404.389 kb on - strand, within SMa0751 at 404.402 kb on + strand, within SMa0751 at 404.540 kb on + strand, within SMa0751 at 404.540 kb on + strand, within SMa0751 at 404.540 kb on + strand, within SMa0751 at 404.648 kb on + strand, within SMa0751 at 404.648 kb on + strand, within SMa0751 at 404.649 kb on - strand, within SMa0751 at 404.649 kb on - strand, within SMa0751 at 404.650 kb on + strand, within SMa0751 at 404.651 kb on - strand, within SMa0751 at 404.708 kb on + strand, within SMa0751 at 404.755 kb on + strand, within SMa0751 at 404.810 kb on + strand, within SMa0751 at 404.899 kb on + strand, within SMa0751 at 404.899 kb on + strand, within SMa0751 at 404.900 kb on - strand, within SMa0751 at 404.900 kb on - strand, within SMa0751 at 404.992 kb on + strand, within SMa0751 at 405.021 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751 at 405.105 kb on - strand, within SMa0751 at 405.158 kb on - strand, within SMa0751 at 405.205 kb on - strand, within SMa0751 at 405.234 kb on - strand, within SMa0751 at 405.389 kb on + strand at 405.390 kb on - strand at 405.636 kb on + strand, within SMa0752 at 405.636 kb on + strand, within SMa0752 at 405.636 kb on + strand, within SMa0752 at 405.637 kb on - strand, within SMa0752 at 405.637 kb on - strand, within SMa0752 at 405.637 kb on - strand, within SMa0752 at 405.638 kb on + strand, within SMa0752 at 405.733 kb on + strand, within SMa0752 at 405.733 kb on + strand, within SMa0752 at 405.734 kb on - strand, within SMa0752 at 405.734 kb on - strand, within SMa0752 at 405.737 kb on + strand, within SMa0752 at 405.737 kb on + strand, within SMa0752 at 405.737 kb on + strand, within SMa0752 at 405.738 kb on - strand, within SMa0752 at 406.077 kb on + strand, within SMa0752 at 406.118 kb on + strand, within SMa0752 at 406.118 kb on + strand, within SMa0752 at 406.119 kb on - strand, within SMa0752 at 406.309 kb on + strand, within SMa0752 at 406.379 kb on + strand, within SMa0752 at 406.379 kb on + strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.409 kb on + strand at 406.410 kb on - strand at 406.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 403,383 + SMa0750 0.23 -0.4 403,383 + SMa0750 0.23 +0.6 403,384 - SMa0750 0.23 +0.2 403,384 - SMa0750 0.23 +1.6 403,395 + SMa0750 0.25 -2.0 403,395 + SMa0750 0.25 +1.1 403,587 + SMa0750 0.47 -1.3 403,730 + SMa0750 0.63 +0.1 403,730 + SMa0750 0.63 -0.1 404,070 + -1.6 404,071 - -0.0 404,071 - -0.4 404,071 - +0.2 404,071 - -1.3 404,092 + -0.2 404,165 + +0.3 404,279 + -0.1 404,279 + +1.0 404,280 - -2.5 404,280 - -3.6 404,282 - -1.7 404,298 - -1.1 404,324 + +2.3 404,325 - -0.8 404,325 - -0.9 404,339 + SMa0751 0.11 -1.3 404,340 - SMa0751 0.11 +0.2 404,374 + SMa0751 0.14 -2.7 404,378 + SMa0751 0.14 +0.0 404,379 - SMa0751 0.14 -0.2 404,379 - SMa0751 0.14 +0.2 404,388 + SMa0751 0.15 -1.7 404,389 - SMa0751 0.15 +1.9 404,402 + SMa0751 0.16 -0.5 404,540 + SMa0751 0.27 -1.3 404,540 + SMa0751 0.27 +0.8 404,540 + SMa0751 0.27 -2.6 404,648 + SMa0751 0.36 -1.5 404,648 + SMa0751 0.36 +1.1 404,649 - SMa0751 0.36 +0.4 404,649 - SMa0751 0.36 +0.3 404,650 + SMa0751 0.36 -1.4 404,651 - SMa0751 0.36 -1.0 404,708 + SMa0751 0.41 -2.1 404,755 + SMa0751 0.44 +0.2 404,810 + SMa0751 0.49 +0.2 404,899 + SMa0751 0.56 +0.6 404,899 + SMa0751 0.56 +0.8 404,900 - SMa0751 0.56 +1.9 404,900 - SMa0751 0.56 +4.5 404,992 + SMa0751 0.64 +1.3 405,021 - SMa0751 0.66 -0.6 405,023 - SMa0751 0.66 +0.7 405,023 - SMa0751 0.66 +0.4 405,023 - SMa0751 0.66 -3.5 405,105 - SMa0751 0.73 -1.6 405,158 - SMa0751 0.77 +0.1 405,205 - SMa0751 0.81 -1.4 405,234 - SMa0751 0.83 -0.1 405,389 + +0.4 405,390 - -1.4 405,636 + SMa0752 0.18 -1.9 405,636 + SMa0752 0.18 -2.5 405,636 + SMa0752 0.18 +0.3 405,637 - SMa0752 0.18 +0.2 405,637 - SMa0752 0.18 -0.9 405,637 - SMa0752 0.18 +0.1 405,638 + SMa0752 0.18 +0.9 405,733 + SMa0752 0.27 +1.1 405,733 + SMa0752 0.27 -0.2 405,734 - SMa0752 0.27 -1.4 405,734 - SMa0752 0.27 -0.6 405,737 + SMa0752 0.27 +0.9 405,737 + SMa0752 0.27 +0.7 405,737 + SMa0752 0.27 -4.0 405,738 - SMa0752 0.27 +1.9 406,077 + SMa0752 0.59 -1.0 406,118 + SMa0752 0.63 +0.6 406,118 + SMa0752 0.63 +2.8 406,119 - SMa0752 0.63 +0.6 406,309 + SMa0752 0.81 +0.1 406,379 + SMa0752 0.88 -0.0 406,379 + SMa0752 0.88 +0.6 406,380 - SMa0752 0.88 +0.4 406,380 - SMa0752 0.88 +0.4 406,380 - SMa0752 0.88 +1.2 406,409 + -0.8 406,410 - +0.9 406,410 - -0.8
Or see this region's nucleotide sequence