Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0612 and SMa0615 are separated by 4 nucleotides SMa0615 and SMa0616 are separated by 22 nucleotides SMa0616 and SMa0617 overlap by 10 nucleotides SMa0617 and SMa0620 are separated by 218 nucleotides
SMa0612: SMa0612 - cbb3-type cytochrome c oxidase subunit I, at 326,972 to 328,627
SMa0612
SMa0615: SMa0615 - cbb3-type cytochrome c oxidase subunit II, at 328,632 to 329,384
SMa0615
SMa0616: SMa0616 - FixQ3 nitrogen fixation protein, at 329,407 to 329,577
SMa0616
SMa0617: SMa0617 - FixP3 Diheme c-type cytochrome, at 329,568 to 330,449
SMa0617
SMa0620: SMa0620 - hypothetical protein, at 330,668 to 331,474
SMa0620
Position (kb) 329
330
331 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 328.815 kb on + strand, within SMa0615 at 328.816 kb on - strand, within SMa0615 at 328.833 kb on + strand, within SMa0615 at 328.834 kb on - strand, within SMa0615 at 328.917 kb on + strand, within SMa0615 at 328.972 kb on + strand, within SMa0615 at 328.973 kb on - strand, within SMa0615 at 328.984 kb on - strand, within SMa0615 at 328.984 kb on - strand, within SMa0615 at 329.002 kb on + strand, within SMa0615 at 329.002 kb on + strand, within SMa0615 at 329.055 kb on + strand, within SMa0615 at 329.136 kb on + strand, within SMa0615 at 329.337 kb on + strand at 329.338 kb on - strand at 329.338 kb on - strand at 329.338 kb on - strand at 329.338 kb on - strand at 329.745 kb on + strand, within SMa0617 at 329.745 kb on + strand, within SMa0617 at 329.745 kb on + strand, within SMa0617 at 329.746 kb on - strand, within SMa0617 at 329.747 kb on + strand, within SMa0617 at 329.747 kb on + strand, within SMa0617 at 329.843 kb on + strand, within SMa0617 at 329.844 kb on - strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.863 kb on + strand, within SMa0617 at 329.864 kb on - strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 329.970 kb on + strand, within SMa0617 at 330.141 kb on + strand, within SMa0617 at 330.142 kb on - strand, within SMa0617 at 330.142 kb on - strand, within SMa0617 at 330.168 kb on + strand, within SMa0617 at 330.307 kb on - strand, within SMa0617 at 330.327 kb on - strand, within SMa0617 at 330.362 kb on + strand at 330.362 kb on + strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.417 kb on + strand at 330.417 kb on + strand at 330.546 kb on - strand at 330.546 kb on - strand at 330.667 kb on + strand at 330.667 kb on + strand at 330.667 kb on + strand at 330.668 kb on - strand at 330.717 kb on + strand at 330.717 kb on + strand at 330.717 kb on + strand at 330.810 kb on - strand, within SMa0620 at 330.831 kb on - strand, within SMa0620 at 330.831 kb on - strand, within SMa0620 at 330.925 kb on + strand, within SMa0620 at 330.925 kb on + strand, within SMa0620 at 330.960 kb on - strand, within SMa0620 at 331.109 kb on + strand, within SMa0620 at 331.110 kb on - strand, within SMa0620 at 331.153 kb on + strand, within SMa0620 at 331.371 kb on + strand, within SMa0620
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 328,815 + SMa0615 0.24 +1.2 328,816 - SMa0615 0.24 -0.7 328,833 + SMa0615 0.27 -0.4 328,834 - SMa0615 0.27 -1.2 328,917 + SMa0615 0.38 -0.4 328,972 + SMa0615 0.45 +2.5 328,973 - SMa0615 0.45 +0.7 328,984 - SMa0615 0.47 -0.1 328,984 - SMa0615 0.47 +0.4 329,002 + SMa0615 0.49 +0.0 329,002 + SMa0615 0.49 -1.3 329,055 + SMa0615 0.56 +0.2 329,136 + SMa0615 0.67 +0.2 329,337 + -0.2 329,338 - -0.1 329,338 - -1.2 329,338 - +0.6 329,338 - -0.9 329,745 + SMa0617 0.20 -1.3 329,745 + SMa0617 0.20 +0.6 329,745 + SMa0617 0.20 +0.5 329,746 - SMa0617 0.20 -1.0 329,747 + SMa0617 0.20 +1.6 329,747 + SMa0617 0.20 -2.6 329,843 + SMa0617 0.31 -0.1 329,844 - SMa0617 0.31 -0.9 329,863 + SMa0617 0.33 -2.9 329,863 + SMa0617 0.33 -1.3 329,863 + SMa0617 0.33 -0.3 329,864 - SMa0617 0.34 -0.5 329,970 + SMa0617 0.46 -1.8 329,970 + SMa0617 0.46 +3.4 329,970 + SMa0617 0.46 +1.5 330,141 + SMa0617 0.65 -0.7 330,142 - SMa0617 0.65 +0.3 330,142 - SMa0617 0.65 -0.2 330,168 + SMa0617 0.68 +0.5 330,307 - SMa0617 0.84 -2.7 330,327 - SMa0617 0.86 -2.2 330,362 + -1.0 330,362 + -3.8 330,363 - -0.5 330,363 - -2.6 330,417 + -0.8 330,417 + +0.1 330,546 - +0.9 330,546 - -2.2 330,667 + +0.5 330,667 + +0.7 330,667 + -0.8 330,668 - -3.3 330,717 + +0.1 330,717 + -1.6 330,717 + +0.6 330,810 - SMa0620 0.18 -0.7 330,831 - SMa0620 0.20 -1.8 330,831 - SMa0620 0.20 +0.7 330,925 + SMa0620 0.32 -1.2 330,925 + SMa0620 0.32 -1.5 330,960 - SMa0620 0.36 +0.1 331,109 + SMa0620 0.55 +1.9 331,110 - SMa0620 0.55 -0.1 331,153 + SMa0620 0.60 +0.4 331,371 + SMa0620 0.87 +0.5
Or see this region's nucleotide sequence