Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0372 and SMa0374 are separated by 111 nucleotides SMa0374 and SMa0376 are separated by 317 nucleotides
SMa0372: SMa0372 - LysR family transcriptional regulator, at 199,105 to 200,004
SMa0372
SMa0374: SMa0374 - dioxygenase/lyase, at 200,116 to 201,048
SMa0374
SMa0376: SMa0376 - hydrolase, at 201,366 to 202,055
SMa0376
Position (kb) 200
201
202 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 199.200 kb on - strand, within SMa0372 at 199.247 kb on - strand, within SMa0372 at 199.379 kb on - strand, within SMa0372 at 199.434 kb on - strand, within SMa0372 at 199.534 kb on - strand, within SMa0372 at 199.589 kb on + strand, within SMa0372 at 199.589 kb on + strand, within SMa0372 at 199.838 kb on - strand, within SMa0372 at 200.051 kb on + strand at 200.073 kb on + strand at 200.082 kb on - strand at 200.252 kb on - strand, within SMa0374 at 200.260 kb on + strand, within SMa0374 at 200.260 kb on + strand, within SMa0374 at 200.263 kb on + strand, within SMa0374 at 200.264 kb on - strand, within SMa0374 at 200.302 kb on + strand, within SMa0374 at 200.303 kb on - strand, within SMa0374 at 200.303 kb on - strand, within SMa0374 at 200.443 kb on - strand, within SMa0374 at 200.672 kb on + strand, within SMa0374 at 200.672 kb on + strand, within SMa0374 at 200.672 kb on + strand at 200.673 kb on - strand, within SMa0374 at 200.685 kb on - strand, within SMa0374 at 200.717 kb on + strand, within SMa0374 at 200.772 kb on + strand, within SMa0374 at 200.772 kb on + strand, within SMa0374 at 200.884 kb on + strand, within SMa0374 at 200.885 kb on - strand, within SMa0374 at 200.926 kb on - strand, within SMa0374 at 200.979 kb on + strand at 200.980 kb on - strand at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.774 kb on + strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.918 kb on + strand, within SMa0376 at 201.918 kb on + strand, within SMa0376 at 201.919 kb on - strand, within SMa0376 at 201.919 kb on - strand, within SMa0376 at 201.978 kb on + strand, within SMa0376 at 201.984 kb on + strand, within SMa0376 at 201.984 kb on + strand, within SMa0376 at 201.985 kb on - strand, within SMa0376 at 201.985 kb on - strand, within SMa0376 at 202.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 199,200 - SMa0372 0.11 +0.1 199,247 - SMa0372 0.16 +0.2 199,379 - SMa0372 0.30 -1.5 199,434 - SMa0372 0.37 +0.4 199,534 - SMa0372 0.48 +1.2 199,589 + SMa0372 0.54 +0.0 199,589 + SMa0372 0.54 +0.5 199,838 - SMa0372 0.81 +1.8 200,051 + -1.5 200,073 + -0.1 200,082 - -0.4 200,252 - SMa0374 0.15 -2.2 200,260 + SMa0374 0.15 -0.4 200,260 + SMa0374 0.15 +0.1 200,263 + SMa0374 0.16 -2.1 200,264 - SMa0374 0.16 -0.3 200,302 + SMa0374 0.20 -1.5 200,303 - SMa0374 0.20 -1.6 200,303 - SMa0374 0.20 +1.7 200,443 - SMa0374 0.35 +1.6 200,672 + SMa0374 0.60 -0.1 200,672 + SMa0374 0.60 -0.3 200,672 + +3.0 200,673 - SMa0374 0.60 -0.2 200,685 - SMa0374 0.61 +0.6 200,717 + SMa0374 0.64 +0.4 200,772 + SMa0374 0.70 -1.1 200,772 + SMa0374 0.70 -0.9 200,884 + SMa0374 0.82 -3.1 200,885 - SMa0374 0.82 -1.1 200,926 - SMa0374 0.87 -2.3 200,979 + -3.0 200,980 - -0.8 201,718 + SMa0376 0.51 -0.3 201,718 + SMa0376 0.51 -0.0 201,718 + SMa0376 0.51 +0.3 201,718 + SMa0376 0.51 -1.2 201,719 - SMa0376 0.51 -2.5 201,719 - SMa0376 0.51 +0.3 201,719 - SMa0376 0.51 +0.7 201,719 - SMa0376 0.51 +0.8 201,719 - SMa0376 0.51 +0.7 201,719 - SMa0376 0.51 +1.0 201,774 + SMa0376 0.59 -0.4 201,775 - SMa0376 0.59 -3.7 201,775 - SMa0376 0.59 -3.8 201,775 - SMa0376 0.59 -1.7 201,775 - SMa0376 0.59 +0.3 201,918 + SMa0376 0.80 +0.6 201,918 + SMa0376 0.80 -0.5 201,919 - SMa0376 0.80 -0.8 201,919 - SMa0376 0.80 -2.1 201,978 + SMa0376 0.89 +1.1 201,984 + SMa0376 0.90 -0.5 201,984 + SMa0376 0.90 -1.0 201,985 - SMa0376 0.90 -2.1 201,985 - SMa0376 0.90 -0.3 202,017 - -2.2
Or see this region's nucleotide sequence