Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0105 and SMa0106 are separated by 5 nucleotides SMa0106 and SMa0108 overlap by 4 nucleotides SMa0108 and SMa0110 overlap by 4 nucleotides
SMa0105: SMa0105 - ABC transporter permease, at 54,624 to 55,559
SMa0105
SMa0106: SMa0106 - ABC transporter permease, at 55,565 to 56,386
SMa0106
SMa0108: SMa0108 - ABC transporter ATP-binding protein, at 56,383 to 57,297
SMa0108
SMa0110: SMa0110 - ABC transporter ATP-binding protein, at 57,294 to 58,256
SMa0110
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 55.524 kb on + strand at 55.525 kb on - strand at 55.847 kb on + strand, within SMa0106 at 55.984 kb on + strand, within SMa0106 at 56.048 kb on + strand, within SMa0106 at 56.049 kb on - strand, within SMa0106 at 56.128 kb on + strand, within SMa0106 at 56.497 kb on + strand, within SMa0108 at 56.497 kb on + strand, within SMa0108 at 56.580 kb on - strand, within SMa0108 at 56.840 kb on - strand, within SMa0108 at 56.876 kb on + strand, within SMa0108 at 56.969 kb on + strand, within SMa0108 at 56.970 kb on - strand, within SMa0108 at 57.073 kb on + strand, within SMa0108 at 57.073 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.137 kb on - strand, within SMa0108 at 57.137 kb on - strand, within SMa0108 at 57.139 kb on - strand, within SMa0108 at 57.603 kb on + strand, within SMa0110 at 57.603 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.960 kb on - strand, within SMa0110 at 57.960 kb on - strand, within SMa0110 at 58.050 kb on - strand, within SMa0110 at 58.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 55,524 + +0.6 55,525 - -1.0 55,847 + SMa0106 0.34 +0.8 55,984 + SMa0106 0.51 +1.4 56,048 + SMa0106 0.59 +0.4 56,049 - SMa0106 0.59 +0.7 56,128 + SMa0106 0.68 -0.5 56,497 + SMa0108 0.12 -3.7 56,497 + SMa0108 0.12 +0.1 56,580 - SMa0108 0.22 +0.8 56,840 - SMa0108 0.50 -0.6 56,876 + SMa0108 0.54 +0.6 56,969 + SMa0108 0.64 +1.5 56,970 - SMa0108 0.64 -1.1 57,073 + SMa0108 0.75 -3.9 57,073 + SMa0108 0.75 -0.4 57,136 + SMa0108 0.82 -2.1 57,136 + SMa0108 0.82 -0.3 57,136 + SMa0108 0.82 -1.6 57,137 - SMa0108 0.82 -2.8 57,137 - SMa0108 0.82 -2.6 57,139 - SMa0108 0.83 +0.8 57,603 + SMa0110 0.32 -1.5 57,603 + SMa0110 0.32 +0.2 57,959 + SMa0110 0.69 +1.2 57,959 + SMa0110 0.69 +2.5 57,959 + SMa0110 0.69 +0.3 57,959 + SMa0110 0.69 +0.5 57,960 - SMa0110 0.69 -4.4 57,960 - SMa0110 0.69 -2.6 58,050 - SMa0110 0.79 -0.7 58,233 - -0.7
Or see this region's nucleotide sequence